MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.6 nTPM
HPA Brain:107.5 nTPM
GTEx:70.6 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:25.6 nTPM
Mouse:39.8 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.3
2586 Male, age 75, left hemisphere 118.3
2219 Male, age 76, both hemispheres 99.6
2411 Female, age 72, unknown 98.0
1827 Male, age 72, unknown 96.8
2019 Male, age 18, unknown 96.0
2828 Female, age 72, unknown 93.8
2666 Male, age 74, left hemisphere 87.4
1870 Female, age 42, unknown 81.9
1830 Male, age 51, unknown 81.1
1833 Male, age 53, unknown 80.3
Dorsal raphe nucleus
nTPM: 88.2
2298 Female, age 72, unknown 96.9
2750 Male, age 76, both hemispheres 94.9
2047 Male, age 72, unknown 93.9
1828 Male, age 53, unknown 86.8
2016 Female, age 72, unknown 68.7
Inferior colliculus
nTPM: 78.9
1890 Male, age 53, unknown 82.8
2849 Male, age 72, unknown 77.9
1848 Female, age 42, unknown 77.7
2097 Female, age 72, unknown 77.2
Median raphe nucleus
nTPM: 103.9
2220 Male, age 76, midline 103.9
Periaquaductal grey, anterior
nTPM: 102.5
1795 Male, age 51, unknown 110.7
2502 Female, age 75, unknown 101.2
1947 Male, age 18, unknown 95.7
Periaquaductal grey, dorsal
nTPM: 75.4
1831 Male, age 72, unknown 82.8
1840 Male, age 53, unknown 80.0
2464 Female, age 72, unknown 76.8
2850 Male, age 76, both hemispheres 62.2
Periaquaductal grey, lateral
nTPM: 76.9
2053 Male, age 18, unknown 81.7
2272 Male, age 74, both hemispheres 77.5
2140 Male, age 76, both hemispheres 71.6
Pretectal area
nTPM: 92.8
1816 Male, age 51, unknown 109.8
2007 Male, age 72, unknown 108.2
1944 Female, age 72, unknown 107.4
2667 Female, age 75, unknown 99.7
1815 Male, age 53, unknown 98.7
1817 Female, age 42, unknown 97.4
2407 Male, age 75, both hemispheres 85.9
2224 Female, age 72, unknown 84.1
2825 Male, age 18, unknown 79.5
2273 Male, age 74, both hemispheres 75.9
2316 Male, age 76, right hemisphere 73.6
Red nucleus
nTPM: 91.0
2584 Male, age 75, left hemisphere 112.6
2588 Male, age 74, left hemisphere 107.6
2785 Male, age 18, unknown 102.9
2503 Female, age 72, unknown 93.5
1904 Male, age 53, unknown 89.6
2769 Male, age 72, unknown 87.3
1821 Female, age 72, unknown 86.2
2227 Male, age 72, unknown 86.2
2823 Male, age 76, right hemisphere 85.1
2725 Female, age 75, unknown 81.7
1865 Male, age 51, unknown 81.2
1954 Female, age 42, unknown 78.5
Substantia nigra
nTPM: 107.5
1916 Female, age 42, unknown 147.6
2665 Male, age 74, both hemispheres 118.8
1851 Male, age 51, unknown 111.9
1941 Male, age 53, unknown 111.9
2409 Female, age 72, unknown 102.1
1889 Female, age 72, unknown 100.9
2699 Male, age 18, unknown 100.0
2583 Male, age 75, right hemisphere 97.4
2590 Female, age 75, unknown 92.5
2241 Male, age 72, unknown 91.8
Superior colliculus
nTPM: 92.6
2668 Female, age 75, unknown 109.1
2087 Female, age 72, unknown 107.8
2664 Male, age 75, both hemispheres 106.7
1796 Male, age 53, unknown 99.5
2261 Male, age 18, unknown 96.3
1913 Female, age 42, unknown 84.6
1839 Male, age 51, unknown 82.9
1995 Male, age 72, unknown 80.6
1895 Male, age 76, right hemisphere 80.3
2587 Male, age 74, left hemisphere 78.0
Ventral tegmental area
nTPM: 100.6
2410 Female, age 72, unknown 112.9
2218 Male, age 76, both hemispheres 110.7
1942 Male, age 51, unknown 103.7
1915 Female, age 42, unknown 102.4
2223 Female, age 72, unknown 88.0
2021 Male, age 53, unknown 85.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.6
Samples: 139

Max nTPM: 147.0
Min nTPM: 37.9
Std nTPM: 20.3
Median nTPM: 67.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 147.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 137.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 119.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 118.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 115.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 110.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 110.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 103.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 102.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 101.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 101.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.7
Samples: 4

Max nTPM: 32.6
Min nTPM: 14.3
Sample A Female 29.6
Sample B Female 22.4
Sample C Male 32.6
Sample D Male 14.3
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 39.0
Min nTPM: 15.4
Sample A Female 15.4
Sample B Female 21.7
Sample C Male 39.0
Sample D Male 25.1
Periaqueductal gray
nTPM: 20.4
Samples: 3

Max nTPM: 22.9
Min nTPM: 15.5
Sample B Female 22.7
Sample C Male 22.9
Sample D Male 15.5
Superior colliculi
nTPM: 25.6
Samples: 4

Max nTPM: 30.7
Min nTPM: 23.4
Sample A Female 23.4
Sample B Female 23.8
Sample C Male 30.7
Sample D Male 24.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.8
Samples: 4

Max nTPM: 41.8
Min nTPM: 38.5
Sample A Male 38.5
Sample B Male 39.2
Sample C Female 39.6
Sample D Female 41.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
69095968 Antisense, RP_050324_02_F05, Mouse strain C57BL/6J (56 days, male) 7.1

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