MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.3 nTPM
HPA Brain:26.8 nTPM
GTEx:31.3 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:78.2 nTPM
Mouse:99.3 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.3
2411 Female, age 72, unknown 24.8
2019 Male, age 18, unknown 23.8
2219 Male, age 76, both hemispheres 21.9
1827 Male, age 72, unknown 21.3
1870 Female, age 42, unknown 20.4
1833 Male, age 53, unknown 19.6
1830 Male, age 51, unknown 18.6
2828 Female, age 72, unknown 18.1
2666 Male, age 74, left hemisphere 17.5
2586 Male, age 75, left hemisphere 17.2
Dorsal raphe nucleus
nTPM: 21.7
2298 Female, age 72, unknown 24.9
2750 Male, age 76, both hemispheres 23.2
2047 Male, age 72, unknown 23.1
1828 Male, age 53, unknown 21.8
2016 Female, age 72, unknown 15.6
Inferior colliculus
nTPM: 19.3
2097 Female, age 72, unknown 22.3
1848 Female, age 42, unknown 19.3
1890 Male, age 53, unknown 19.1
2849 Male, age 72, unknown 16.3
Median raphe nucleus
nTPM: 26.8
2220 Male, age 76, midline 26.8
Periaquaductal grey, anterior
nTPM: 20.6
1947 Male, age 18, unknown 23.0
2502 Female, age 75, unknown 19.6
1795 Male, age 51, unknown 19.3
Periaquaductal grey, dorsal
nTPM: 17.8
1840 Male, age 53, unknown 19.9
2850 Male, age 76, both hemispheres 17.9
2464 Female, age 72, unknown 17.4
1831 Male, age 72, unknown 16.1
Periaquaductal grey, lateral
nTPM: 18.9
2272 Male, age 74, both hemispheres 23.5
2053 Male, age 18, unknown 17.3
2140 Male, age 76, both hemispheres 16.0
Pretectal area
nTPM: 22.7
1816 Male, age 51, unknown 26.9
1944 Female, age 72, unknown 26.8
2007 Male, age 72, unknown 26.5
1817 Female, age 42, unknown 24.9
2273 Male, age 74, both hemispheres 24.6
1815 Male, age 53, unknown 22.9
2667 Female, age 75, unknown 21.8
2224 Female, age 72, unknown 21.5
2316 Male, age 76, right hemisphere 18.2
2825 Male, age 18, unknown 18.1
2407 Male, age 75, both hemispheres 17.8
Red nucleus
nTPM: 19.1
1821 Female, age 72, unknown 25.1
2725 Female, age 75, unknown 21.4
2785 Male, age 18, unknown 20.9
1954 Female, age 42, unknown 20.6
2503 Female, age 72, unknown 20.0
1865 Male, age 51, unknown 19.9
1904 Male, age 53, unknown 18.6
2227 Male, age 72, unknown 18.2
2823 Male, age 76, right hemisphere 17.7
2584 Male, age 75, left hemisphere 16.7
2769 Male, age 72, unknown 15.8
2588 Male, age 74, left hemisphere 14.6
Substantia nigra
nTPM: 26.5
2241 Male, age 72, unknown 38.5
2409 Female, age 72, unknown 34.3
1916 Female, age 42, unknown 32.2
1851 Male, age 51, unknown 27.5
1941 Male, age 53, unknown 27.2
1889 Female, age 72, unknown 25.7
2590 Female, age 75, unknown 23.2
2699 Male, age 18, unknown 20.9
2583 Male, age 75, right hemisphere 18.0
2665 Male, age 74, both hemispheres 17.0
Superior colliculus
nTPM: 19.5
2587 Male, age 74, left hemisphere 24.5
2261 Male, age 18, unknown 21.9
2668 Female, age 75, unknown 20.6
2087 Female, age 72, unknown 20.3
1895 Male, age 76, right hemisphere 19.7
1796 Male, age 53, unknown 19.5
1839 Male, age 51, unknown 18.9
1913 Female, age 42, unknown 18.7
2664 Male, age 75, both hemispheres 16.1
1995 Male, age 72, unknown 15.3
Ventral tegmental area
nTPM: 23.3
2410 Female, age 72, unknown 27.6
1915 Female, age 42, unknown 26.0
2218 Male, age 76, both hemispheres 24.0
2223 Female, age 72, unknown 22.2
1942 Male, age 51, unknown 20.3
2021 Male, age 53, unknown 19.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 139

Max nTPM: 61.7
Min nTPM: 15.7
Std nTPM: 8.4
Median nTPM: 29.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 61.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 58.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 57.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 55.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 51.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 45.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 45.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 44.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 44.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 43.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.7
FF:10158-103A5 76 years, female 32.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 78.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.1
Samples: 4

Max nTPM: 81.0
Min nTPM: 53.5
Sample A Female 81.0
Sample B Female 53.5
Sample C Male 78.6
Sample D Male 71.3
Midbrain
nTPM: 78.2
Samples: 4

Max nTPM: 102.8
Min nTPM: 63.4
Sample A Female 102.8
Sample B Female 63.4
Sample C Male 77.7
Sample D Male 68.8
Periaqueductal gray
nTPM: 60.6
Samples: 3

Max nTPM: 68.4
Min nTPM: 55.1
Sample B Female 55.1
Sample C Male 68.4
Sample D Male 58.4
Superior colliculi
nTPM: 74.9
Samples: 4

Max nTPM: 81.1
Min nTPM: 63.2
Sample A Female 80.1
Sample B Female 63.2
Sample C Male 81.1
Sample D Male 75.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.3
Samples: 4

Max nTPM: 100.4
Min nTPM: 97.9
Sample A Male 97.9
Sample B Male 100.4
Sample C Female 98.6
Sample D Female 100.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69568932 Antisense, RP_050426_03_B04, Mouse strain C57BL/6J (56 days, male) 1.5

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