MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.0 nTPM
HPA Brain:8.8 nTPM
GTEx:2.0 nTPM
FANTOM5:12.3 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:8.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.8
1870 Female, age 42, unknown 8.8
1827 Male, age 72, unknown 8.5
2219 Male, age 76, both hemispheres 8.4
2586 Male, age 75, left hemisphere 8.2
2019 Male, age 18, unknown 8.1
1830 Male, age 51, unknown 8.0
2411 Female, age 72, unknown 7.5
2828 Female, age 72, unknown 7.5
1833 Male, age 53, unknown 7.3
2666 Male, age 74, left hemisphere 6.0
Dorsal raphe nucleus
nTPM: 7.8
2750 Male, age 76, both hemispheres 8.3
2016 Female, age 72, unknown 8.2
2298 Female, age 72, unknown 8.2
2047 Male, age 72, unknown 7.5
1828 Male, age 53, unknown 6.7
Inferior colliculus
nTPM: 8.8
2097 Female, age 72, unknown 10.0
1848 Female, age 42, unknown 8.6
1890 Male, age 53, unknown 8.2
2849 Male, age 72, unknown 8.2
Median raphe nucleus
nTPM: 8.7
2220 Male, age 76, midline 8.7
Periaquaductal grey, anterior
nTPM: 7.7
1947 Male, age 18, unknown 9.0
2502 Female, age 75, unknown 7.5
1795 Male, age 51, unknown 6.5
Periaquaductal grey, dorsal
nTPM: 7.7
1840 Male, age 53, unknown 8.7
2464 Female, age 72, unknown 8.4
2850 Male, age 76, both hemispheres 7.2
1831 Male, age 72, unknown 6.7
Periaquaductal grey, lateral
nTPM: 7.4
2053 Male, age 18, unknown 8.0
2140 Male, age 76, both hemispheres 7.3
2272 Male, age 74, both hemispheres 6.8
Pretectal area
nTPM: 8.0
2273 Male, age 74, both hemispheres 9.0
1815 Male, age 53, unknown 8.6
2825 Male, age 18, unknown 8.6
2007 Male, age 72, unknown 8.5
2316 Male, age 76, right hemisphere 8.3
1816 Male, age 51, unknown 8.1
1817 Female, age 42, unknown 7.9
2667 Female, age 75, unknown 7.9
2224 Female, age 72, unknown 7.7
1944 Female, age 72, unknown 7.0
2407 Male, age 75, both hemispheres 6.7
Red nucleus
nTPM: 8.4
2503 Female, age 72, unknown 9.4
1865 Male, age 51, unknown 9.2
1904 Male, age 53, unknown 9.1
2823 Male, age 76, right hemisphere 9.1
1821 Female, age 72, unknown 8.9
1954 Female, age 42, unknown 8.7
2588 Male, age 74, left hemisphere 8.7
2769 Male, age 72, unknown 8.3
2227 Male, age 72, unknown 8.0
2725 Female, age 75, unknown 7.8
2785 Male, age 18, unknown 7.7
2584 Male, age 75, left hemisphere 6.4
Substantia nigra
nTPM: 7.2
2590 Female, age 75, unknown 7.9
1889 Female, age 72, unknown 7.7
2241 Male, age 72, unknown 7.7
2665 Male, age 74, both hemispheres 7.5
1941 Male, age 53, unknown 7.3
2583 Male, age 75, right hemisphere 7.2
1851 Male, age 51, unknown 7.1
1916 Female, age 42, unknown 6.9
2409 Female, age 72, unknown 6.4
2699 Male, age 18, unknown 6.2
Superior colliculus
nTPM: 7.7
1895 Male, age 76, right hemisphere 9.7
1839 Male, age 51, unknown 8.2
1995 Male, age 72, unknown 8.2
1913 Female, age 42, unknown 8.0
2668 Female, age 75, unknown 7.8
1796 Male, age 53, unknown 7.6
2587 Male, age 74, left hemisphere 7.6
2087 Female, age 72, unknown 7.1
2261 Male, age 18, unknown 6.8
2664 Male, age 75, both hemispheres 6.2
Ventral tegmental area
nTPM: 7.6
2223 Female, age 72, unknown 8.4
1915 Female, age 42, unknown 7.7
2021 Male, age 53, unknown 7.5
2218 Male, age 76, both hemispheres 7.4
1942 Male, age 51, unknown 7.3
2410 Female, age 72, unknown 7.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.0
Samples: 139

Max nTPM: 5.0
Min nTPM: 0.1
Std nTPM: 0.6
Median nTPM: 1.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 4.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 4.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 3.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 3.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 3.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.0
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 2.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 2.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.3
FF:10158-103A5 76 years, female 12.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 9.0
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 7.5
Sample C Male 8.0
Sample D Male 9.0
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 8.4
Min nTPM: 7.5
Sample A Female 7.5
Sample B Female 8.4
Sample C Male 7.7
Sample D Male 7.6
Periaqueductal gray
nTPM: 8.4
Samples: 3

Max nTPM: 8.6
Min nTPM: 8.2
Sample B Female 8.6
Sample C Male 8.2
Sample D Male 8.3
Superior colliculi
nTPM: 7.1
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 6.7
Sample C Male 7.4
Sample D Male 7.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.4
Sample A Male 8.5
Sample B Male 8.0
Sample C Female 8.5
Sample D Female 7.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69290848 Antisense, RP_050407_04_H02, Mouse strain C57BL/6J (56 days, male) 0.2

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