MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.2 nTPM
HPA Brain:86.2 nTPM
GTEx:22.2 nTPM
FANTOM5:58.4 Scaled Tags Per Million
Mouse:23.9 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.9
2586 Male, age 75, left hemisphere 54.9
2019 Male, age 18, unknown 52.3
1833 Male, age 53, unknown 52.2
1870 Female, age 42, unknown 51.4
1830 Male, age 51, unknown 47.5
1827 Male, age 72, unknown 46.7
2828 Female, age 72, unknown 44.2
2411 Female, age 72, unknown 39.1
2219 Male, age 76, both hemispheres 36.7
2666 Male, age 74, left hemisphere 34.0
Dorsal raphe nucleus
nTPM: 53.9
2298 Female, age 72, unknown 71.4
2016 Female, age 72, unknown 67.2
1828 Male, age 53, unknown 53.8
2750 Male, age 76, both hemispheres 39.8
2047 Male, age 72, unknown 37.4
Inferior colliculus
nTPM: 45.9
2849 Male, age 72, unknown 51.4
1848 Female, age 42, unknown 47.6
2097 Female, age 72, unknown 42.5
1890 Male, age 53, unknown 42.0
Median raphe nucleus
nTPM: 59.4
2220 Male, age 76, midline 59.4
Periaquaductal grey, anterior
nTPM: 69.6
1795 Male, age 51, unknown 79.2
2502 Female, age 75, unknown 68.8
1947 Male, age 18, unknown 60.6
Periaquaductal grey, dorsal
nTPM: 73.2
2850 Male, age 76, both hemispheres 115.7
1831 Male, age 72, unknown 69.7
1840 Male, age 53, unknown 60.9
2464 Female, age 72, unknown 46.5
Periaquaductal grey, lateral
nTPM: 86.2
2140 Male, age 76, both hemispheres 108.6
2272 Male, age 74, both hemispheres 95.5
2053 Male, age 18, unknown 54.5
Pretectal area
nTPM: 57.9
2273 Male, age 74, both hemispheres 88.2
2667 Female, age 75, unknown 75.1
2224 Female, age 72, unknown 74.7
1815 Male, age 53, unknown 54.4
2316 Male, age 76, right hemisphere 54.4
2825 Male, age 18, unknown 51.6
2407 Male, age 75, both hemispheres 51.3
1816 Male, age 51, unknown 49.6
1817 Female, age 42, unknown 47.8
1944 Female, age 72, unknown 47.3
2007 Male, age 72, unknown 42.5
Red nucleus
nTPM: 46.8
2785 Male, age 18, unknown 54.2
1904 Male, age 53, unknown 52.1
1954 Female, age 42, unknown 50.2
1821 Female, age 72, unknown 49.9
1865 Male, age 51, unknown 49.4
2584 Male, age 75, left hemisphere 48.3
2769 Male, age 72, unknown 48.2
2227 Male, age 72, unknown 47.1
2725 Female, age 75, unknown 43.5
2503 Female, age 72, unknown 43.3
2823 Male, age 76, right hemisphere 40.8
2588 Male, age 74, left hemisphere 34.2
Substantia nigra
nTPM: 45.1
2699 Male, age 18, unknown 56.2
2241 Male, age 72, unknown 50.0
2409 Female, age 72, unknown 47.0
1851 Male, age 51, unknown 46.3
2590 Female, age 75, unknown 46.1
1889 Female, age 72, unknown 45.5
1916 Female, age 42, unknown 45.4
2583 Male, age 75, right hemisphere 43.0
1941 Male, age 53, unknown 38.3
2665 Male, age 74, both hemispheres 33.3
Superior colliculus
nTPM: 52.4
1995 Male, age 72, unknown 69.7
2664 Male, age 75, both hemispheres 61.3
1913 Female, age 42, unknown 60.2
2261 Male, age 18, unknown 58.1
1796 Male, age 53, unknown 51.9
2587 Male, age 74, left hemisphere 48.5
1839 Male, age 51, unknown 46.5
2087 Female, age 72, unknown 44.8
1895 Male, age 76, right hemisphere 43.0
2668 Female, age 75, unknown 40.4
Ventral tegmental area
nTPM: 42.8
2021 Male, age 53, unknown 47.9
1915 Female, age 42, unknown 43.9
2218 Male, age 76, both hemispheres 43.9
1942 Male, age 51, unknown 40.8
2223 Female, age 72, unknown 40.5
2410 Female, age 72, unknown 39.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.2
Samples: 139

Max nTPM: 53.2
Min nTPM: 9.7
Std nTPM: 7.1
Median nTPM: 21.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 53.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 41.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 36.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 35.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 35.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 35.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 34.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 33.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 33.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 33.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 33.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.4
FF:10158-103A5 76 years, female 58.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 25.9
Min nTPM: 21.9
Sample A Male 25.9
Sample B Male 23.8
Sample C Female 23.7
Sample D Female 21.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
69817019 Antisense, RP_050510_02_D10, Mouse strain C57BL/6J (56 days, male) 10.7

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