MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.6 nTPM
HPA Brain:205.8 nTPM
GTEx:83.6 nTPM
FANTOM5:222.4 Scaled Tags Per Million
Pig:279.1 nTPM
Mouse:330.4 nTPM
Allen mouse:10.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 205.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 163.4
2411 Female, age 72, unknown 204.9
2019 Male, age 18, unknown 197.0
1827 Male, age 72, unknown 192.9
1870 Female, age 42, unknown 158.9
2219 Male, age 76, both hemispheres 154.3
2828 Female, age 72, unknown 150.4
2666 Male, age 74, left hemisphere 149.4
1833 Male, age 53, unknown 147.1
1830 Male, age 51, unknown 144.6
2586 Male, age 75, left hemisphere 134.2
Dorsal raphe nucleus
nTPM: 185.0
2298 Female, age 72, unknown 221.2
2047 Male, age 72, unknown 194.2
1828 Male, age 53, unknown 192.7
2750 Male, age 76, both hemispheres 176.5
2016 Female, age 72, unknown 140.3
Inferior colliculus
nTPM: 167.2
2097 Female, age 72, unknown 201.3
1848 Female, age 42, unknown 166.2
1890 Male, age 53, unknown 165.5
2849 Male, age 72, unknown 135.8
Median raphe nucleus
nTPM: 183.6
2220 Male, age 76, midline 183.6
Periaquaductal grey, anterior
nTPM: 170.2
1947 Male, age 18, unknown 190.0
1795 Male, age 51, unknown 164.9
2502 Female, age 75, unknown 155.5
Periaquaductal grey, dorsal
nTPM: 150.8
1840 Male, age 53, unknown 156.1
2464 Female, age 72, unknown 151.5
1831 Male, age 72, unknown 150.2
2850 Male, age 76, both hemispheres 145.4
Periaquaductal grey, lateral
nTPM: 149.2
2272 Male, age 74, both hemispheres 172.2
2053 Male, age 18, unknown 143.1
2140 Male, age 76, both hemispheres 132.3
Pretectal area
nTPM: 191.6
2007 Male, age 72, unknown 244.1
1816 Male, age 51, unknown 242.8
1944 Female, age 72, unknown 241.6
1817 Female, age 42, unknown 230.7
1815 Male, age 53, unknown 192.7
2667 Female, age 75, unknown 192.5
2273 Male, age 74, both hemispheres 184.7
2224 Female, age 72, unknown 174.8
2825 Male, age 18, unknown 139.4
2407 Male, age 75, both hemispheres 136.5
2316 Male, age 76, right hemisphere 128.4
Red nucleus
nTPM: 153.1
1821 Female, age 72, unknown 197.8
2785 Male, age 18, unknown 176.7
2725 Female, age 75, unknown 165.3
1954 Female, age 42, unknown 156.5
2503 Female, age 72, unknown 155.3
1865 Male, age 51, unknown 153.4
2588 Male, age 74, left hemisphere 145.3
1904 Male, age 53, unknown 142.8
2823 Male, age 76, right hemisphere 141.9
2227 Male, age 72, unknown 137.8
2769 Male, age 72, unknown 137.8
2584 Male, age 75, left hemisphere 126.8
Substantia nigra
nTPM: 205.8
1916 Female, age 42, unknown 270.8
1941 Male, age 53, unknown 255.0
1889 Female, age 72, unknown 224.5
2241 Male, age 72, unknown 223.2
1851 Male, age 51, unknown 218.6
2409 Female, age 72, unknown 200.2
2590 Female, age 75, unknown 178.8
2665 Male, age 74, both hemispheres 171.5
2583 Male, age 75, right hemisphere 163.8
2699 Male, age 18, unknown 151.2
Superior colliculus
nTPM: 162.8
2087 Female, age 72, unknown 206.8
2261 Male, age 18, unknown 188.7
2668 Female, age 75, unknown 177.3
2587 Male, age 74, left hemisphere 172.1
1796 Male, age 53, unknown 169.4
1895 Male, age 76, right hemisphere 159.9
1839 Male, age 51, unknown 148.1
1913 Female, age 42, unknown 147.0
1995 Male, age 72, unknown 131.3
2664 Male, age 75, both hemispheres 127.1
Ventral tegmental area
nTPM: 181.1
2410 Female, age 72, unknown 232.3
1915 Female, age 42, unknown 200.8
2218 Male, age 76, both hemispheres 192.1
2223 Female, age 72, unknown 163.5
1942 Male, age 51, unknown 157.7
2021 Male, age 53, unknown 140.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.6
Samples: 139

Max nTPM: 279.1
Min nTPM: 19.8
Std nTPM: 36.2
Median nTPM: 74.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 279.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 241.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 180.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 169.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 166.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 159.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 156.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 145.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 144.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 140.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 134.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 222.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 222.4
FF:10158-103A5 76 years, female 222.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 279.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 232.0
Samples: 4

Max nTPM: 309.3
Min nTPM: 160.9
Sample A Female 309.3
Sample B Female 194.9
Sample C Male 262.9
Sample D Male 160.9
Midbrain
nTPM: 263.7
Samples: 4

Max nTPM: 366.3
Min nTPM: 214.5
Sample A Female 234.2
Sample B Female 214.5
Sample C Male 366.3
Sample D Male 239.6
Periaqueductal gray
nTPM: 203.8
Samples: 3

Max nTPM: 234.3
Min nTPM: 179.5
Sample B Female 197.6
Sample C Male 234.3
Sample D Male 179.5
Superior colliculi
nTPM: 279.1
Samples: 4

Max nTPM: 360.4
Min nTPM: 222.5
Sample A Female 280.2
Sample B Female 222.5
Sample C Male 360.4
Sample D Male 253.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 330.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 330.4
Samples: 4

Max nTPM: 359.2
Min nTPM: 272.5
Sample A Male 272.5
Sample B Male 350.9
Sample C Female 359.2
Sample D Female 339.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
69549024 Antisense, RP_050426_02_G06, Mouse strain C57BL/6J (56 days, male) 10.8

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