MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.9 nTPM
HPA Brain:64.5 nTPM
GTEx:20.9 nTPM
FANTOM5:79.7 Scaled Tags Per Million
Pig:33.5 nTPM
Mouse:28.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.1
2411 Female, age 72, unknown 51.2
1833 Male, age 53, unknown 49.2
1870 Female, age 42, unknown 47.6
2219 Male, age 76, both hemispheres 44.8
2019 Male, age 18, unknown 44.5
1830 Male, age 51, unknown 42.4
1827 Male, age 72, unknown 41.3
2828 Female, age 72, unknown 39.4
2586 Male, age 75, left hemisphere 36.1
2666 Male, age 74, left hemisphere 34.2
Dorsal raphe nucleus
nTPM: 49.2
2298 Female, age 72, unknown 60.0
2750 Male, age 76, both hemispheres 55.8
2047 Male, age 72, unknown 49.4
2016 Female, age 72, unknown 40.6
1828 Male, age 53, unknown 40.3
Inferior colliculus
nTPM: 41.1
2097 Female, age 72, unknown 49.7
1848 Female, age 42, unknown 40.7
2849 Male, age 72, unknown 38.9
1890 Male, age 53, unknown 35.3
Median raphe nucleus
nTPM: 64.5
2220 Male, age 76, midline 64.5
Periaquaductal grey, anterior
nTPM: 43.2
2502 Female, age 75, unknown 46.6
1947 Male, age 18, unknown 46.5
1795 Male, age 51, unknown 36.5
Periaquaductal grey, dorsal
nTPM: 41.6
2850 Male, age 76, both hemispheres 43.8
1840 Male, age 53, unknown 42.3
1831 Male, age 72, unknown 41.8
2464 Female, age 72, unknown 38.7
Periaquaductal grey, lateral
nTPM: 39.4
2140 Male, age 76, both hemispheres 41.0
2272 Male, age 74, both hemispheres 40.1
2053 Male, age 18, unknown 37.0
Pretectal area
nTPM: 45.3
1816 Male, age 51, unknown 56.7
1944 Female, age 72, unknown 53.4
1817 Female, age 42, unknown 53.2
2224 Female, age 72, unknown 49.0
2007 Male, age 72, unknown 46.9
1815 Male, age 53, unknown 46.2
2316 Male, age 76, right hemisphere 42.6
2273 Male, age 74, both hemispheres 41.9
2667 Female, age 75, unknown 39.0
2825 Male, age 18, unknown 39.0
2407 Male, age 75, both hemispheres 30.6
Red nucleus
nTPM: 44.2
1821 Female, age 72, unknown 54.1
1904 Male, age 53, unknown 52.1
1954 Female, age 42, unknown 48.3
2503 Female, age 72, unknown 47.3
1865 Male, age 51, unknown 46.2
2785 Male, age 18, unknown 44.3
2227 Male, age 72, unknown 43.7
2823 Male, age 76, right hemisphere 42.1
2769 Male, age 72, unknown 42.0
2588 Male, age 74, left hemisphere 40.3
2725 Female, age 75, unknown 40.2
2584 Male, age 75, left hemisphere 29.7
Substantia nigra
nTPM: 37.9
1889 Female, age 72, unknown 44.7
2590 Female, age 75, unknown 41.0
1916 Female, age 42, unknown 40.1
1941 Male, age 53, unknown 39.8
2241 Male, age 72, unknown 39.3
2409 Female, age 72, unknown 38.3
1851 Male, age 51, unknown 37.4
2699 Male, age 18, unknown 35.0
2665 Male, age 74, both hemispheres 32.7
2583 Male, age 75, right hemisphere 30.8
Superior colliculus
nTPM: 44.0
2261 Male, age 18, unknown 50.4
1913 Female, age 42, unknown 48.5
2087 Female, age 72, unknown 47.3
2668 Female, age 75, unknown 46.2
2587 Male, age 74, left hemisphere 44.5
1995 Male, age 72, unknown 44.3
1895 Male, age 76, right hemisphere 42.4
1839 Male, age 51, unknown 41.8
1796 Male, age 53, unknown 40.5
2664 Male, age 75, both hemispheres 34.0
Ventral tegmental area
nTPM: 44.5
2410 Female, age 72, unknown 47.4
2218 Male, age 76, both hemispheres 47.2
2223 Female, age 72, unknown 47.0
2021 Male, age 53, unknown 44.0
1942 Male, age 51, unknown 41.4
1915 Female, age 42, unknown 39.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.9
Samples: 139

Max nTPM: 46.3
Min nTPM: 10.9
Std nTPM: 5.7
Median nTPM: 19.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 40.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 36.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 36.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 35.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 33.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 32.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 31.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 30.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 29.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 29.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.7
FF:10158-103A5 76 years, female 79.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 40.1
Min nTPM: 23.3
Sample A Female 38.7
Sample B Female 25.5
Sample C Male 40.1
Sample D Male 23.3
Midbrain
nTPM: 33.5
Samples: 4

Max nTPM: 37.5
Min nTPM: 31.2
Sample A Female 32.3
Sample B Female 31.2
Sample C Male 37.5
Sample D Male 33.0
Periaqueductal gray
nTPM: 29.8
Samples: 3

Max nTPM: 34.3
Min nTPM: 27.2
Sample B Female 27.2
Sample C Male 34.3
Sample D Male 28.0
Superior colliculi
nTPM: 32.2
Samples: 4

Max nTPM: 36.0
Min nTPM: 24.5
Sample A Female 35.9
Sample B Female 24.5
Sample C Male 36.0
Sample D Male 32.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 28.8
Min nTPM: 27.5
Sample A Male 27.5
Sample B Male 28.3
Sample C Female 28.8
Sample D Female 28.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70474761 Antisense, RP_050614_04_H10, Mouse strain C57BL/6J (56 days, male) 0.1
73930852 Antisense, RP_051214_04_D05, Mouse strain C57BL/6J (56 days, male) 0.1

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