MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.2 nTPM
HPA Brain:148.1 nTPM
GTEx:87.2 nTPM
FANTOM5:174.7 Scaled Tags Per Million
Pig:137.2 nTPM
Mouse:137.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 148.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.7
2019 Male, age 18, unknown 155.6
1830 Male, age 51, unknown 133.9
1870 Female, age 42, unknown 130.2
1833 Male, age 53, unknown 129.3
2411 Female, age 72, unknown 126.8
2666 Male, age 74, left hemisphere 112.2
1827 Male, age 72, unknown 107.9
2586 Male, age 75, left hemisphere 104.3
2828 Female, age 72, unknown 97.1
2219 Male, age 76, both hemispheres 79.2
Dorsal raphe nucleus
nTPM: 93.1
2750 Male, age 76, both hemispheres 133.7
1828 Male, age 53, unknown 93.7
2016 Female, age 72, unknown 91.7
2047 Male, age 72, unknown 76.8
2298 Female, age 72, unknown 69.5
Inferior colliculus
nTPM: 96.6
1890 Male, age 53, unknown 102.8
2849 Male, age 72, unknown 97.5
1848 Female, age 42, unknown 94.6
2097 Female, age 72, unknown 91.3
Median raphe nucleus
nTPM: 93.0
2220 Male, age 76, midline 93.0
Periaquaductal grey, anterior
nTPM: 83.3
2502 Female, age 75, unknown 90.9
1947 Male, age 18, unknown 87.3
1795 Male, age 51, unknown 71.5
Periaquaductal grey, dorsal
nTPM: 73.8
2464 Female, age 72, unknown 87.6
1831 Male, age 72, unknown 84.4
2850 Male, age 76, both hemispheres 68.7
1840 Male, age 53, unknown 54.7
Periaquaductal grey, lateral
nTPM: 79.5
2272 Male, age 74, both hemispheres 93.7
2053 Male, age 18, unknown 81.1
2140 Male, age 76, both hemispheres 63.8
Pretectal area
nTPM: 99.0
1817 Female, age 42, unknown 123.8
2007 Male, age 72, unknown 119.8
1815 Male, age 53, unknown 116.9
2407 Male, age 75, both hemispheres 102.2
2316 Male, age 76, right hemisphere 98.6
1944 Female, age 72, unknown 96.7
1816 Male, age 51, unknown 94.0
2273 Male, age 74, both hemispheres 91.8
2825 Male, age 18, unknown 86.7
2667 Female, age 75, unknown 83.4
2224 Female, age 72, unknown 74.8
Red nucleus
nTPM: 148.1
1865 Male, age 51, unknown 181.5
1821 Female, age 72, unknown 173.0
2823 Male, age 76, right hemisphere 161.4
2785 Male, age 18, unknown 157.6
1904 Male, age 53, unknown 155.6
2503 Female, age 72, unknown 152.1
1954 Female, age 42, unknown 148.7
2227 Male, age 72, unknown 142.1
2769 Male, age 72, unknown 138.2
2588 Male, age 74, left hemisphere 133.5
2725 Female, age 75, unknown 127.2
2584 Male, age 75, left hemisphere 106.4
Substantia nigra
nTPM: 98.0
1941 Male, age 53, unknown 113.5
2590 Female, age 75, unknown 112.5
1889 Female, age 72, unknown 112.0
2583 Male, age 75, right hemisphere 110.6
2409 Female, age 72, unknown 103.0
1851 Male, age 51, unknown 97.1
2665 Male, age 74, both hemispheres 89.0
2241 Male, age 72, unknown 83.9
2699 Male, age 18, unknown 83.8
1916 Female, age 42, unknown 74.3
Superior colliculus
nTPM: 108.3
1895 Male, age 76, right hemisphere 129.6
2587 Male, age 74, left hemisphere 127.1
1913 Female, age 42, unknown 125.6
1995 Male, age 72, unknown 119.7
2668 Female, age 75, unknown 113.9
1839 Male, age 51, unknown 104.0
1796 Male, age 53, unknown 94.2
2087 Female, age 72, unknown 92.0
2261 Male, age 18, unknown 89.0
2664 Male, age 75, both hemispheres 88.1
Ventral tegmental area
nTPM: 101.4
2223 Female, age 72, unknown 148.8
2410 Female, age 72, unknown 117.6
2218 Male, age 76, both hemispheres 91.4
1942 Male, age 51, unknown 85.6
1915 Female, age 42, unknown 83.2
2021 Male, age 53, unknown 81.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.2
Samples: 139

Max nTPM: 188.4
Min nTPM: 42.7
Std nTPM: 30.6
Median nTPM: 79.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 188.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 183.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 175.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 166.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 153.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 153.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 152.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 152.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 150.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 146.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 142.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 174.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 174.7
FF:10158-103A5 76 years, female 174.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 137.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 110.7
Samples: 4

Max nTPM: 142.9
Min nTPM: 81.2
Sample A Female 126.6
Sample B Female 81.2
Sample C Male 92.2
Sample D Male 142.9
Midbrain
nTPM: 137.2
Samples: 4

Max nTPM: 236.9
Min nTPM: 91.7
Sample A Female 236.9
Sample B Female 115.8
Sample C Male 104.3
Sample D Male 91.7
Periaqueductal gray
nTPM: 80.5
Samples: 3

Max nTPM: 92.4
Min nTPM: 66.9
Sample B Female 92.4
Sample C Male 66.9
Sample D Male 82.2
Superior colliculi
nTPM: 120.0
Samples: 4

Max nTPM: 147.8
Min nTPM: 85.3
Sample A Female 125.0
Sample B Female 85.3
Sample C Male 147.8
Sample D Male 121.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 137.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.3
Samples: 4

Max nTPM: 140.4
Min nTPM: 133.0
Sample A Male 137.6
Sample B Male 133.0
Sample C Female 140.4
Sample D Female 138.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71763540 Antisense, RP_050921_02_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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