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RNF165
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  • RNF165
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RNF165
Synonyms Ark2C, ARKL2, lncAMPC, RNF111L2
Gene descriptioni

Full gene name according to HGNC.

Ring finger protein 165
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 18
Cytoband q21.1
Chromosome location (bp) 46326809 - 46463140
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000141622 (version 109)
Entrez gene 494470
HGNC HGNC:31696
UniProt Q6ZSG1 (UniProt - Evidence at protein level)
neXtProt NX_Q6ZSG1
GeneCards RNF165
Antibodypedia RNF165 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

E3 ubiquitin-protein ligase that acts as a regulator of motor axon elongation. Required for efficient motor axon extension in the dorsal forelimb by enhancing the transcriptional responses of the SMAD1/SMAD5/SMAD8 effectors, which are activated downstream of BMP. Acts by mediating ubiquitination and degradation of SMAD inhibitors such as SMAD6, SMAD7, SKI and SNON isoform of SKIL.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ubl conjugation pathway
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

Encoded in regions involved in pericentric inversions in patients with bipolar affective disorder. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RNF165-201
ENSP00000269439
ENST00000269439
Q6ZSG1
[Direct mapping] E3 ubiquitin-protein ligase RNF165
Show all
A0A059NXK6
[Target identity:100%; Query identity:100%] Putative ubiquitin ligase component
Show all
Enzymes
   ENZYME proteins
   Transferases
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000209 [protein polyubiquitination]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0007409 [axonogenesis]
GO:0008045 [motor neuron axon guidance]
GO:0008270 [zinc ion binding]
GO:0010259 [multicellular organism aging]
GO:0016740 [transferase activity]
GO:0016874 [ligase activity]
GO:0030163 [protein catabolic process]
GO:0030513 [positive regulation of BMP signaling pathway]
GO:0032991 [protein-containing complex]
GO:0035136 [forelimb morphogenesis]
GO:0046872 [metal ion binding]
GO:0060173 [limb development]
GO:0060384 [innervation]
GO:0061061 [muscle structure development]
GO:0061630 [ubiquitin protein ligase activity]
Show all
346 aa
39.5 kDa
No 0
RNF165-202
ENSP00000444285
ENST00000543885
Q6ZSG1
[Direct mapping] E3 ubiquitin-protein ligase RNF165
Show all
Enzymes
   ENZYME proteins
   Transferases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0008045 [motor neuron axon guidance]
GO:0008270 [zinc ion binding]
GO:0016740 [transferase activity]
GO:0030513 [positive regulation of BMP signaling pathway]
GO:0046872 [metal ion binding]
GO:0061630 [ubiquitin protein ligase activity]
Show all
154 aa
17.9 kDa
No 0
RNF165-204
ENSP00000466208
ENST00000587853
K7ELT0
[Direct mapping] E3 ubiquitin-protein ligase RNF165
Show all
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
22 aa
2.5 kDa
No 0
RNF165-205
ENSP00000467609
ENST00000588679
K7EPZ9
[Direct mapping] E3 ubiquitin-protein ligase RNF165
Show all
   Phobius predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
68 aa
7.5 kDa
No 0
RNF165-206
ENSP00000466809
ENST00000590330
K7ELT0
[Direct mapping] E3 ubiquitin-protein ligase RNF165
Show all
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
22 aa
2.5 kDa
No 0
RNF165-208
ENSP00000467730
ENST00000593230
K7EQ96
[Direct mapping] E3 ubiquitin-protein ligase RNF165
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
156 aa
18.1 kDa
No 0

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