HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.2 nTPM
HPA Brain:3.5 nTPM
GTEx:16.2 nTPM
FANTOM5:20.8 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:0.6 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042225
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 3.5
Sample id Sample description nTPM
Hippocampus
nTPM: 2.1
1898 Male, age 80, left hemisphere 3.2
2621 Female, age 67, right hemisphere 2.4
1911 Female, age 85, right hemisphere 2.1
2148 Female, age 91, left hemisphere 1.9
2529 Female, age 94, left hemisphere 1.8
1855 Male, age 76, left hemisphere 1.3
Dentate gyrus
nTPM: 2.2
2530 Female, age 94, left hemisphere 3.3
2531 Female, age 67, both hemispheres 2.9
1927 Female, age 91, both hemispheres 2.2
2246 Female, age 85, both hemispheres 1.7
2010 Male, age 76, both hemispheres 1.6
2528 Male, age 74, both hemispheres 1.3
Entorhinal gyrus
nTPM: 3.5
2613 Female, age 94, left hemisphere 5.9
1787 Male, age 76, left hemisphere 3.9
2764 Male, age 80, right hemisphere 3.2
1938 Female, age 85, left hemisphere 2.9
2117 Female, age 91, right hemisphere 2.6
2686 Male, age 75, right hemisphere 2.2
Hippocampus, CA1
nTPM: 2.2
2749 Male, age 80, left hemisphere 3.6
2527 Male, age 74, both hemispheres 2.4
1873 Female, age 85, both hemispheres 1.9
2082 Female, age 91, right hemisphere 1.7
2045 Male, age 76, both hemispheres 1.5
Hippocampus, CA2
nTPM: 2.7
1892 Male, age 76, both hemispheres 3.3
2437 Female, age 94, left hemisphere 3.2
2249 Male, age 74, both hemispheres 2.7
1963 Male, age 80, left hemisphere 2.6
2113 Female, age 91, right hemisphere 2.1
1940 Female, age 85, left hemisphere 2.0
Hippocampus, CA3
nTPM: 2.7
2620 Female, age 94, left hemisphere 4.1
2137 Male, age 80, left hemisphere 3.6
2861 Female, age 67, both hemispheres 2.7
1867 Male, age 76, both hemispheres 2.2
1891 Female, age 85, both hemispheres 1.9
2436 Male, age 74, both hemispheres 1.7
Parahippocampal cortex
nTPM: 2.3
2532 Female, age 72, left hemisphere 3.2
2692 Male, age 74, both hemispheres 3.1
1850 Male, age 80, both hemispheres 2.4
2018 Male, age 76, both hemispheres 2.4
2250 Female, age 67, right hemisphere 2.3
1990 Female, age 91, right hemisphere 2.2
1933 Female, age 85, both hemispheres 2.1
2622 Female, age 67, right hemisphere 1.9
2693 Female, age 94, both hemispheres 1.9
2245 Female, age 91, both hemispheres 1.4
Perirhinal gyrus
nTPM: 2.4
1841 Female, age 85, right hemisphere 3.3
2848 Male, age 76, right hemisphere 3.0
1794 Male, age 80, right hemisphere 2.6
1847 Female, age 91, left hemisphere 1.9
2521 Female, age 94, right hemisphere 1.4
Subiculum
nTPM: 1.9
1901 Male, age 80, both hemispheres 3.0
1977 Female, age 85, both hemispheres 2.9
2729 Female, age 91, right hemisphere 1.7
2042 Male, age 76, both hemispheres 1.6
2619 Male, age 74, both hemispheres 1.6
2438 Female, age 94, left hemisphere 0.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.2
Samples: 197

Max nTPM: 58.8
Min nTPM: 3.6
Std nTPM: 7.5
Median nTPM: 14.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 58.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 47.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 39.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 39.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 36.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 34.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 34.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 34.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 33.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 32.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 27.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.8
FF:10153-102I9 76 years, female 21.9
FF:10169-103B7 60 years, female 19.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.8
Pig sample Sample description nTPM
Subiculum
nTPM: 3.7
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.8
Sample A Female 4.7
Sample B Female 2.8
Sample C Male 3.0
Sample D Male 4.2
Dorsal hippocampus
nTPM: 3.8
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.2
Sample A Female 5.2
Sample B Female 3.2
Sample C Male 3.5
Sample D Male 3.3
Entorhinal cortex
nTPM: 3.6
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.1
Sample A Female 3.5
Sample B Female 3.6
Sample C Male 4.0
Sample D Male 3.1
Ventral hippocampus
nTPM: 3.7
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.1
Sample A Female 4.3
Sample B Female 3.2
Sample C Male 4.3
Sample D Male 3.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 0.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.4
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.2
Sample A Male 0.6
Sample B Male 0.2
Sample C Female 0.2
Sample D Female 0.7
Hippocampal formation
nTPM: 0.7
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.3
Sample C Female 1.7
Sample D Female 0.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
74635286 Antisense, RP_060215_03_F03, Mouse strain C57BL/6J (56 days, male) 0.1

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