MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.7 nTPM
HPA Brain:57.1 nTPM
GTEx:45.7 nTPM
FANTOM5:34.4 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
2666 Male, age 74, left hemisphere 69.3
2586 Male, age 75, left hemisphere 67.7
2828 Female, age 72, unknown 58.7
1830 Male, age 51, unknown 52.6
1870 Female, age 42, unknown 52.6
1833 Male, age 53, unknown 51.5
2411 Female, age 72, unknown 50.8
2019 Male, age 18, unknown 50.0
1827 Male, age 72, unknown 49.9
2219 Male, age 76, both hemispheres 44.7
Dorsal raphe nucleus
nTPM: 49.9
2016 Female, age 72, unknown 55.6
1828 Male, age 53, unknown 51.9
2750 Male, age 76, both hemispheres 50.3
2047 Male, age 72, unknown 47.1
2298 Female, age 72, unknown 44.4
Inferior colliculus
nTPM: 46.3
2849 Male, age 72, unknown 51.4
1848 Female, age 42, unknown 49.2
1890 Male, age 53, unknown 46.7
2097 Female, age 72, unknown 38.0
Median raphe nucleus
nTPM: 41.7
2220 Male, age 76, midline 41.7
Periaquaductal grey, anterior
nTPM: 55.4
2502 Female, age 75, unknown 57.0
1947 Male, age 18, unknown 55.4
1795 Male, age 51, unknown 53.7
Periaquaductal grey, dorsal
nTPM: 46.7
2464 Female, age 72, unknown 50.5
1840 Male, age 53, unknown 48.1
1831 Male, age 72, unknown 45.5
2850 Male, age 76, both hemispheres 42.7
Periaquaductal grey, lateral
nTPM: 48.1
2140 Male, age 76, both hemispheres 50.0
2272 Male, age 74, both hemispheres 47.6
2053 Male, age 18, unknown 46.7
Pretectal area
nTPM: 45.2
2316 Male, age 76, right hemisphere 51.6
2825 Male, age 18, unknown 50.6
1817 Female, age 42, unknown 48.6
2007 Male, age 72, unknown 48.6
1815 Male, age 53, unknown 47.5
2224 Female, age 72, unknown 45.1
2407 Male, age 75, both hemispheres 44.4
1944 Female, age 72, unknown 42.4
1816 Male, age 51, unknown 41.3
2273 Male, age 74, both hemispheres 39.0
2667 Female, age 75, unknown 38.5
Red nucleus
nTPM: 57.1
2588 Male, age 74, left hemisphere 64.9
2769 Male, age 72, unknown 60.4
2227 Male, age 72, unknown 60.1
2584 Male, age 75, left hemisphere 58.6
2725 Female, age 75, unknown 57.9
2503 Female, age 72, unknown 57.5
1954 Female, age 42, unknown 56.1
2785 Male, age 18, unknown 56.0
1865 Male, age 51, unknown 55.4
1904 Male, age 53, unknown 53.9
2823 Male, age 76, right hemisphere 53.5
1821 Female, age 72, unknown 50.6
Substantia nigra
nTPM: 46.9
2699 Male, age 18, unknown 53.1
2665 Male, age 74, both hemispheres 50.7
2583 Male, age 75, right hemisphere 50.6
2409 Female, age 72, unknown 49.7
1851 Male, age 51, unknown 47.5
2590 Female, age 75, unknown 46.8
1916 Female, age 42, unknown 46.0
1889 Female, age 72, unknown 43.4
1941 Male, age 53, unknown 42.0
2241 Male, age 72, unknown 39.6
Superior colliculus
nTPM: 50.1
1839 Male, age 51, unknown 57.4
2668 Female, age 75, unknown 55.5
2664 Male, age 75, both hemispheres 53.1
1796 Male, age 53, unknown 52.8
1995 Male, age 72, unknown 51.4
2587 Male, age 74, left hemisphere 49.5
1913 Female, age 42, unknown 49.4
2261 Male, age 18, unknown 44.4
1895 Male, age 76, right hemisphere 43.5
2087 Female, age 72, unknown 43.4
Ventral tegmental area
nTPM: 49.6
2223 Female, age 72, unknown 56.2
1942 Male, age 51, unknown 50.5
2021 Male, age 53, unknown 50.1
2410 Female, age 72, unknown 48.5
1915 Female, age 42, unknown 46.1
2218 Male, age 76, both hemispheres 46.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.7
Samples: 139

Max nTPM: 89.6
Min nTPM: 16.4
Std nTPM: 13.9
Median nTPM: 42.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 89.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 87.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 76.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 74.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 71.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 71.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 70.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 70.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 68.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 68.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 67.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

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