MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.7 nTPM
HPA Brain:48.9 nTPM
GTEx:20.7 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:5.6 nTPM
Mouse:74.3 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.2
1827 Male, age 72, unknown 45.3
1833 Male, age 53, unknown 42.8
1870 Female, age 42, unknown 41.9
1830 Male, age 51, unknown 36.7
2219 Male, age 76, both hemispheres 35.7
2666 Male, age 74, left hemisphere 35.1
2828 Female, age 72, unknown 34.0
2411 Female, age 72, unknown 33.4
2586 Male, age 75, left hemisphere 30.5
2019 Male, age 18, unknown 16.4
Dorsal raphe nucleus
nTPM: 41.6
2047 Male, age 72, unknown 48.1
2298 Female, age 72, unknown 46.3
1828 Male, age 53, unknown 39.8
2750 Male, age 76, both hemispheres 37.4
2016 Female, age 72, unknown 36.6
Inferior colliculus
nTPM: 47.1
2849 Male, age 72, unknown 64.9
1848 Female, age 42, unknown 50.1
2097 Female, age 72, unknown 40.1
1890 Male, age 53, unknown 33.2
Median raphe nucleus
nTPM: 48.9
2220 Male, age 76, midline 48.9
Periaquaductal grey, anterior
nTPM: 39.2
1947 Male, age 18, unknown 44.1
1795 Male, age 51, unknown 37.3
2502 Female, age 75, unknown 36.3
Periaquaductal grey, dorsal
nTPM: 47.4
1840 Male, age 53, unknown 67.1
2850 Male, age 76, both hemispheres 49.1
2464 Female, age 72, unknown 41.3
1831 Male, age 72, unknown 32.0
Periaquaductal grey, lateral
nTPM: 44.7
2140 Male, age 76, both hemispheres 51.8
2053 Male, age 18, unknown 45.3
2272 Male, age 74, both hemispheres 37.0
Pretectal area
nTPM: 33.7
2825 Male, age 18, unknown 57.0
2316 Male, age 76, right hemisphere 44.2
2224 Female, age 72, unknown 43.6
2273 Male, age 74, both hemispheres 38.4
2407 Male, age 75, both hemispheres 33.8
2667 Female, age 75, unknown 30.7
1815 Male, age 53, unknown 27.4
1816 Male, age 51, unknown 26.3
1944 Female, age 72, unknown 23.7
1817 Female, age 42, unknown 23.2
2007 Male, age 72, unknown 22.6
Red nucleus
nTPM: 21.7
2725 Female, age 75, unknown 31.7
2588 Male, age 74, left hemisphere 28.2
2584 Male, age 75, left hemisphere 26.1
2227 Male, age 72, unknown 24.6
2769 Male, age 72, unknown 22.8
2503 Female, age 72, unknown 20.0
2823 Male, age 76, right hemisphere 19.6
1904 Male, age 53, unknown 19.5
1821 Female, age 72, unknown 19.2
1954 Female, age 42, unknown 18.2
2785 Male, age 18, unknown 16.7
1865 Male, age 51, unknown 13.6
Substantia nigra
nTPM: 29.3
2699 Male, age 18, unknown 36.6
2241 Male, age 72, unknown 35.6
1916 Female, age 42, unknown 35.0
2665 Male, age 74, both hemispheres 29.2
2590 Female, age 75, unknown 28.9
2409 Female, age 72, unknown 28.6
1851 Male, age 51, unknown 27.7
2583 Male, age 75, right hemisphere 25.1
1889 Female, age 72, unknown 24.1
1941 Male, age 53, unknown 22.1
Superior colliculus
nTPM: 35.3
1839 Male, age 51, unknown 50.1
2664 Male, age 75, both hemispheres 48.5
1796 Male, age 53, unknown 44.6
1895 Male, age 76, right hemisphere 43.8
2261 Male, age 18, unknown 33.8
2587 Male, age 74, left hemisphere 32.5
2087 Female, age 72, unknown 29.7
2668 Female, age 75, unknown 25.6
1913 Female, age 42, unknown 23.7
1995 Male, age 72, unknown 20.3
Ventral tegmental area
nTPM: 33.8
1942 Male, age 51, unknown 42.6
2218 Male, age 76, both hemispheres 38.4
1915 Female, age 42, unknown 37.2
2021 Male, age 53, unknown 32.5
2223 Female, age 72, unknown 28.1
2410 Female, age 72, unknown 23.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.7
Samples: 139

Max nTPM: 42.6
Min nTPM: 4.4
Std nTPM: 7.8
Median nTPM: 20.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 42.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 40.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 38.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 37.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 34.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 34.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 34.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 32.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 32.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 31.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.9
FF:10158-103A5 76 years, female 18.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.9
Samples: 4

Max nTPM: 7.0
Min nTPM: 3.3
Sample A Female 7.0
Sample B Female 4.9
Sample C Male 4.2
Sample D Male 3.3
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.9
Sample A Female 6.2
Sample B Female 5.9
Sample C Male 3.9
Sample D Male 5.7
Periaqueductal gray
nTPM: 5.5
Samples: 3

Max nTPM: 5.9
Min nTPM: 5.0
Sample B Female 5.5
Sample C Male 5.0
Sample D Male 5.9
Superior colliculi
nTPM: 5.6
Samples: 4

Max nTPM: 9.5
Min nTPM: 3.2
Sample A Female 9.5
Sample B Female 4.1
Sample C Male 3.2
Sample D Male 5.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.3
Samples: 4

Max nTPM: 83.0
Min nTPM: 67.5
Sample A Male 83.0
Sample B Male 67.5
Sample C Female 69.3
Sample D Female 77.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
75651161 Antisense, RP_060518_01_A06, Mouse strain C57BL/6J (56 days, male) 5.4
68844403 Antisense, RP_050222_01_E09, Mouse strain C57BL/6J (56 days, male) 1.8

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