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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFITM3 is not prognostic in liver cancer
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
798.5
Number of samples
365
Samples
Sample
Description
FPKM
TCGA-DD-AAD5-01A
54 years, male, asian, stage:i, alive, 1345 days
2682.0
TCGA-CC-5259-01A
60 years, female, asian, stage:iiic, alive, 250 days
2609.0
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:i, dead, 438 days
2284.4
TCGA-WQ-AB4B-01A
62 years, male, white, stage:ii, alive, 395 days
2198.8
TCGA-DD-AACI-01A
69 years, male, asian, stage:ii, alive, 1618 days
2167.3
TCGA-KR-A7K2-01A
64 years, male, white, stage:i, alive, 829 days
2110.1
TCGA-DD-A116-01A
68 years, male, asian, stage:iiia, dead, 1622 days
2034.1
TCGA-DD-AADI-01A
43 years, female, asian, stage:i, alive, 1085 days
2023.3
TCGA-G3-A25S-01A
64 years, male, white, stage:i, dead, 416 days
2022.2
TCGA-O8-A75V-01A
54 years, male, stage:i, alive, 538 days
1915.6
TCGA-DD-AADM-01A
58 years, male, asian, stage:ii, dead, 12 days
1848.6
TCGA-MI-A75C-01A
64 years, male, white, stage:i, alive, 291 days
1812.4
TCGA-ZS-A9CD-01A
73 years, male, white, stage:ii, dead, 1386 days
1772.2
TCGA-CC-5264-01A
71 years, male, asian, stage:iiia, dead, 102 days
1756.0
TCGA-DD-AACD-01A
48 years, male, asian, stage:i, dead, 381 days
1716.7
TCGA-BC-A5W4-01A
69 years, male, white, stage:iiia, dead, 547 days
1680.9
TCGA-EP-A3JL-01A
76 years, male, white, stage:i, alive, 303 days
1667.9
TCGA-WX-AA47-01A
33 years, female, white, stage:iiia, dead, 556 days
1666.5
TCGA-UB-A7MF-01A
57 years, male, white, stage:iiia, dead, 214 days
1659.4
TCGA-2Y-A9H1-01A
58 years, male, white, stage:i, dead, 1229 days
1645.5
TCGA-DD-A1EG-01A
77 years, male, white, stage:i, dead, 1372 days
1641.1
TCGA-DD-AAVU-01A
46 years, male, asian, stage:ii, alive, 2202 days
1618.4
TCGA-DD-AAVV-01A
56 years, male, asian, stage:ii, alive, 2455 days
1608.4
TCGA-EP-A2KA-01A
52 years, female, white, stage:iiia, dead, 627 days
1584.2
TCGA-DD-A3A9-01A
64 years, female, white, stage:ivb, dead, 931 days
1551.6
TCGA-DD-AACH-01A
69 years, male, asian, stage:ii, dead, 195 days
1546.6
TCGA-FV-A495-01A
51 years, female, white, stage:ii, alive, 1 days
1499.2
TCGA-CC-A123-01A
24 years, female, asian, stage:iiia, alive, 219 days
1450.8
TCGA-G3-A5SM-01A
58 years, male, white, stage:ii, alive, 520 days
1449.8
TCGA-DD-AADQ-01A
59 years, male, asian, stage:ii, alive, 436 days
1448.9
TCGA-DD-A39V-01A
77 years, male, white, stage:ii, dead, 643 days
1418.5
TCGA-EP-A12J-01A
63 years, male, black or african american, stage:i, alive, 570 days
1410.2
TCGA-G3-A3CG-01A
80 years, male, white, stage:i, alive, 673 days
1354.9
TCGA-DD-A3A7-01A
67 years, male, stage:iiib, dead, 419 days
1353.6
TCGA-CC-5262-01A
67 years, male, asian, stage:iiic, dead, 103 days
1344.0
TCGA-CC-A3MB-01A
36 years, male, asian, stage:iiia, dead, 315 days
1338.6
TCGA-G3-A25Z-01A
58 years, male, asian, stage:i, alive, 655 days
1331.6
TCGA-CC-A7IG-01A
47 years, male, asian, stage:ii, dead, 299 days
1311.1
TCGA-5C-A9VH-01A
70 years, male, white, stage:i, alive, 322 days
1296.5
TCGA-DD-AAC8-01A
72 years, male, asian, stage:i, dead, 16 days
1294.1
TCGA-DD-A3A3-01A
45 years, male, asian, stage:i, dead, 535 days
1288.4
TCGA-BC-A69H-01A
64 years, male, white, stage:ii, alive, 444 days
1285.3
TCGA-LG-A9QD-01A
68 years, male, white, stage:iiia, alive, 366 days
1280.6
TCGA-CC-A5UD-01A
45 years, male, asian, stage:iiia, dead, 304 days
1278.2
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:iiib, alive, 396 days
1269.9
TCGA-DD-AAVX-01A
38 years, male, asian, stage:ii, alive, 1570 days
1267.2
TCGA-DD-A39Y-01A
67 years, male, asian, stage:i, dead, 171 days
1264.5
TCGA-DD-AACO-01A
40 years, male, asian, stage:i, alive, 1876 days
1261.4
TCGA-K7-A6G5-01A
66 years, male, white, stage:i, alive, 512 days
1259.9
TCGA-ZP-A9CV-01A
59 years, male, white, dead, 1088 days
1236.2
TCGA-DD-A4NO-01A
66 years, male, white, stage:i, alive, 2245 days
1236.2
TCGA-GJ-A3OU-01A
59 years, male, white, stage:i, alive, 879 days
1230.9
TCGA-DD-A119-01A
40 years, male, asian, stage:iv, dead, 223 days
1230.4
TCGA-CC-A1HT-01A
50 years, male, asian, stage:iiia, dead, 101 days
1229.6
TCGA-DD-AACC-01A
61 years, male, asian, stage:i, dead, 1685 days
1227.7
TCGA-BD-A3EP-01A
76 years, female, black or african american, stage:i, alive, 409 days
1217.3
TCGA-CC-A9FS-01A
55 years, male, asian, stage:ii, alive, 211 days
1215.1
TCGA-ZP-A9D1-01A
56 years, female, white, alive, 21 days
1214.7
TCGA-FV-A4ZP-01A
78 years, male, white, stage:iiia, dead, 2486 days
1206.6
TCGA-DD-A3A1-01A
65 years, male, stage:iiia, dead, 233 days
1184.7
TCGA-DD-AADJ-01A
70 years, female, asian, stage:i, alive, 1066 days
1180.7
TCGA-DD-AADK-01A
68 years, female, asian, stage:ii, alive, 1049 days
1163.8
TCGA-KR-A7K7-01A
61 years, female, white, stage:ii, alive, 951 days
1160.3
TCGA-CC-A8HV-01A
51 years, female, asian, stage:ii, dead, 279 days
1157.8
TCGA-DD-AADB-01A
51 years, male, asian, stage:i, alive, 1242 days
1157.3
TCGA-2Y-A9GW-01A
64 years, male, white, stage:i, dead, 1271 days
1156.1
TCGA-LG-A6GG-01A
79 years, female, white, stage:ii, alive, 387 days
1143.3
TCGA-KR-A7K8-01A
57 years, male, stage:i, alive, 906 days
1139.3
TCGA-ED-A7PY-01A
20 years, female, asian, stage:ii, alive, 390 days
1137.0
TCGA-DD-AAD2-01A
66 years, male, asian, stage:i, alive, 658 days
1123.4
TCGA-DD-A114-01A
42 years, male, black or african american, stage:ii, dead, 1149 days
1111.7
TCGA-DD-AACB-01A
74 years, female, asian, stage:i, alive, 2324 days
1109.4
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:ii, alive, 594 days
1103.4
TCGA-DD-AACT-01A
69 years, female, asian, stage:i, alive, 1562 days
1100.5
TCGA-DD-AACU-01A
59 years, male, asian, stage:i, alive, 1567 days
1100.0
TCGA-DD-AAC9-01A
51 years, male, asian, stage:i, alive, 347 days
1093.0
TCGA-FV-A3R2-01A
75 years, male, white, stage:i, dead, 194 days
1087.7
TCGA-DD-AAEG-01A
59 years, female, asian, stage:i, alive, 719 days
1077.9
TCGA-RC-A7SF-01A
66 years, male, asian, stage:i, alive, 579 days
1075.8
TCGA-ED-A7PX-01A
48 years, female, asian, stage:ii, alive, 6 days
1075.2
TCGA-DD-AACN-01A
32 years, male, asian, stage:i, alive, 1302 days
1064.8
TCGA-BC-A10S-01A
81 years, male, white, dead, 1423 days
1058.6
TCGA-DD-A39Z-01A
43 years, female, stage:ii, dead, 601 days
1052.5
TCGA-ED-A7XP-01A
53 years, female, asian, stage:ii, alive, 400 days
1040.1
TCGA-DD-AADP-01A
45 years, male, asian, stage:i, alive, 458 days
1035.4
TCGA-G3-AAV4-01A
83 years, female, white, stage:i, dead, 27 days
1021.5
TCGA-DD-A1EI-01A
46 years, male, asian, stage:i, alive, 183 days
1019.4
TCGA-DD-A73G-01A
73 years, female, white, stage:i, alive, 3478 days
1011.1
TCGA-DD-AACF-01A
68 years, male, asian, stage:i, dead, 365 days
1009.1
TCGA-G3-AAUZ-01A
48 years, male, stage:i, alive, 480 days
996.8
TCGA-G3-A7M7-01A
65 years, male, white, stage:i, alive, 361 days
987.8
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:i, alive, 1452 days
982.8
TCGA-2Y-A9H0-01A
49 years, male, white, stage:iiia, alive, 3675 days
982.6
TCGA-G3-A25V-01A
68 years, male, white, stage:i, alive, 860 days
982.5
TCGA-CC-A5UE-01A
48 years, male, asian, stage:iiib, dead, 272 days
980.9
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:i, dead, 52 days
977.8
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:ii, alive, 382 days
972.3
TCGA-FV-A23B-01A
70 years, female, white, stage:ii, dead, 1852 days
968.5
TCGA-DD-A3A4-01A
37 years, male, white, stage:iiia, dead, 612 days
959.6
TCGA-BC-A69I-01A
69 years, male, white, stage:i, alive, 387 days
959.6
TCGA-DD-A11C-01A
69 years, male, white, stage:i, alive, 662 days
955.8
TCGA-DD-AAE0-01A
45 years, female, asian, stage:iiia, alive, 555 days
954.8
TCGA-DD-AADS-01A
63 years, male, asian, stage:i, alive, 474 days
953.4
TCGA-DD-AAVR-01A
44 years, male, asian, stage:i, alive, 2513 days
953.3
TCGA-DD-AAVP-01A
48 years, male, asian, stage:i, alive, 2752 days
948.2
TCGA-DD-AACL-01A
66 years, female, asian, stage:i, dead, 107 days
948.0
TCGA-DD-A39X-01A
78 years, female, white, stage:i, dead, 1694 days
946.1
TCGA-DD-AAE1-01A
52 years, male, asian, stage:i, alive, 552 days
943.0
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:i, alive, 1900 days
935.2
TCGA-G3-A25Y-01A
52 years, female, asian, stage:i, dead, 452 days
934.2
TCGA-BC-A3KF-01A
66 years, female, white, stage:i, alive, 8 days
933.3
TCGA-DD-AADN-01A
59 years, male, asian, stage:i, alive, 898 days
931.0
TCGA-K7-A5RF-01A
64 years, male, white, stage:i, alive, 631 days
927.4
TCGA-RC-A7SK-01A
59 years, male, asian, stage:i, alive, 472 days
926.4
TCGA-MI-A75E-01A
61 years, male, white, stage:iiic, alive, 507 days
924.6
TCGA-ED-A82E-01A
60 years, female, asian, stage:iiia, alive, 408 days
915.2
TCGA-BD-A3ER-01A
62 years, male, white, stage:ii, alive, 1115 days
909.5
TCGA-EP-A3RK-01A
73 years, male, white, stage:iiia, alive, 363 days
907.2
TCGA-RC-A6M6-01A
75 years, male, white, stage:ii, alive, 9 days
907.0
TCGA-G3-A5SI-01A
44 years, male, asian, stage:ii, dead, 768 days
900.8
TCGA-DD-AAW1-01A
55 years, male, asian, stage:iiia, alive, 1989 days
898.1
TCGA-DD-AACG-01A
52 years, male, asian, stage:ii, dead, 469 days
896.9
TCGA-FV-A2QQ-01A
80 years, male, white, stage:i, alive, 729 days
890.5
TCGA-UB-A7ME-01A
51 years, male, asian, stage:i, alive, 486 days
882.9
TCGA-ES-A2HS-01A
80 years, male, white, stage:i, dead, 688 days
882.2
TCGA-MR-A8JO-01A
34 years, male, white, stage:i, alive, 330 days
881.9
TCGA-ED-A459-01A
47 years, male, asian, stage:ii, alive, 910 days
878.5
TCGA-MI-A75H-01A
77 years, male, white, alive, 747 days
877.8
TCGA-DD-AAD1-01A
51 years, female, asian, stage:i, alive, 564 days
870.8
TCGA-DD-AACY-01A
61 years, male, asian, stage:i, alive, 1450 days
864.8
TCGA-2Y-A9HB-01A
66 years, male, stage:i, alive, 260 days
858.3
TCGA-DD-AACQ-01A
50 years, male, asian, stage:ii, dead, 432 days
855.6
TCGA-HP-A5MZ-01A
62 years, male, stage:i, dead, 91 days
844.1
TCGA-UB-AA0U-01A
60 years, male, white, stage:ii, alive, 327 days
842.5
TCGA-DD-A3A6-01A
72 years, female, white, stage:ii, dead, 3258 days
836.0
TCGA-CC-A7IE-01A
57 years, male, asian, stage:iiia, dead, 217 days
834.7
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:i, alive, 12 days
834.1
TCGA-YA-A8S7-01A
69 years, male, white, stage:iiia, dead, 412 days
833.0
TCGA-XR-A8TG-01A
59 years, male, white, stage:i, alive, 898 days
829.8
TCGA-DD-A4NH-01A
65 years, female, white, stage:iiib, alive, 917 days
828.9
TCGA-DD-A11A-01A
67 years, male, black or african american, stage:i, alive, 79 days
826.2
TCGA-DD-AAEH-01A
73 years, male, asian, stage:i, alive, 784 days
819.3
TCGA-BC-4073-01B
73 years, male, white, stage:iiia, alive, 849 days
817.1
TCGA-DD-AAD0-01A
73 years, female, asian, stage:i, alive, 137 days
814.8
TCGA-DD-AAE9-01A
69 years, male, asian, stage:i, alive, 722 days
814.0
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:i, dead, 19 days
810.8
TCGA-T1-A6J8-01A
68 years, male, white, alive, 23 days
809.5
TCGA-2Y-A9GY-01A
64 years, female, white, stage:ii, dead, 757 days
809.1
TCGA-DD-A4NJ-01A
54 years, female, white, stage:ii, alive, 928 days
806.5
TCGA-DD-A4NG-01A
77 years, male, white, stage:iiia, dead, 802 days
803.8
TCGA-DD-AACS-01A
39 years, male, asian, stage:i, alive, 1804 days
803.3
TCGA-DD-AACV-01A
53 years, male, asian, stage:i, alive, 1531 days
802.9
TCGA-2Y-A9H7-01A
81 years, female, white, stage:i, alive, 1168 days
799.9
TCGA-CC-A7II-01A
55 years, male, asian, stage:iiia, alive, 399 days
795.1
TCGA-KR-A7K0-01A
65 years, male, white, stage:i, dead, 65 days
792.5
TCGA-DD-AAE4-01A
49 years, female, asian, stage:i, alive, 608 days
785.3
TCGA-DD-AADF-01A
64 years, female, asian, stage:i, dead, 115 days
785.1
TCGA-BD-A2L6-01A
69 years, male, white, alive, 1363 days
783.5
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:i, alive, 2728 days
781.4
TCGA-MI-A75I-01A
61 years, male, black or african american, alive, 630 days
781.4
TCGA-BC-A110-01A
51 years, female, black or african american, dead, 2116 days
779.7
TCGA-ZP-A9CY-01A
66 years, female, white, alive, 782 days
775.4
TCGA-ZP-A9D2-01A
51 years, male, white, dead, 765 days
773.6
TCGA-PD-A5DF-01A
58 years, female, white, stage:iiib, dead, 639 days
767.0
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:i, alive, 519 days
766.3
TCGA-DD-A1EC-01A
20 years, female, white, stage:i, alive, 602 days
766.1
TCGA-2Y-A9H2-01A
64 years, female, white, stage:i, alive, 1731 days
763.5
TCGA-RC-A7SH-01A
42 years, male, asian, stage:ii, alive, 468 days
759.6
TCGA-CC-A9FW-01A
68 years, male, asian, stage:iiia, alive, 248 days
759.4
TCGA-DD-A1EH-01A
23 years, male, white, stage:iii, alive, 1495 days
753.9
TCGA-DD-AAEB-01A
60 years, male, asian, stage:i, alive, 478 days
752.4
TCGA-DD-A4NQ-01A
60 years, male, white, stage:ii, dead, 373 days
752.3
TCGA-2Y-A9H5-01A
59 years, female, white, stage:i, dead, 555 days
751.3
TCGA-DD-A115-01A
53 years, male, white, stage:iiia, dead, 2542 days
748.2
TCGA-BC-A217-01A
75 years, female, white, stage:ii, dead, 1397 days
745.1
TCGA-5R-AA1D-01A
17 years, female, white, stage:iiia, alive, 449 days
744.6
TCGA-FV-A2QR-01A
male, white, stage:i, dead, 581 days
743.1
TCGA-DD-AAVS-01A
56 years, male, asian, stage:i, alive, 1823 days
741.4
TCGA-DD-A73B-01A
72 years, female, white, stage:i, dead, 283 days
740.2
TCGA-DD-AA3A-01A
81 years, female, white, stage:i, dead, 410 days
739.2
TCGA-DD-A4NN-01A
56 years, female, white, stage:i, dead, 899 days
734.5
TCGA-ED-A627-01A
74 years, male, white, stage:i, alive, 423 days
732.6
TCGA-DD-AAVY-01A
56 years, male, asian, stage:iiia, alive, 1970 days
727.0
TCGA-DD-AACK-01A
70 years, male, asian, stage:i, alive, 9 days
722.8
TCGA-DD-AACX-01A
66 years, male, asian, stage:ii, alive, 170 days
722.2
TCGA-DD-A3A5-01A
66 years, female, white, stage:iii, dead, 3125 days
712.1
TCGA-EP-A2KB-01A
46 years, female, white, stage:i, dead, 596 days
711.7
TCGA-5R-AAAM-01A
65 years, female, white, stage:ii, dead, 46 days
710.8
TCGA-BC-A10R-01A
66 years, female, white, dead, 308 days
709.1
TCGA-ED-A5KG-01A
60 years, female, asian, stage:ii, alive, 854 days
708.4
TCGA-CC-A3MC-01A
54 years, male, asian, stage:iiia, alive, 363 days
706.9
TCGA-DD-AAW0-01A
54 years, male, asian, stage:i, alive, 2015 days
706.3
TCGA-2Y-A9GV-01A
54 years, female, white, stage:i, dead, 2532 days
705.9
TCGA-K7-AAU7-01A
61 years, male, white, stage:ii, alive, 359 days
705.4
TCGA-MI-A75G-01A
63 years, male, white, stage:ii, alive, 698 days
704.3
TCGA-G3-A3CK-01A
61 years, male, asian, stage:i, alive, 585 days
703.6
TCGA-RC-A6M5-01A
20 years, female, white, stage:iva, alive, 15 days
697.0
TCGA-CC-A7IH-01A
58 years, male, asian, stage:iiia, alive, 365 days
695.1
TCGA-4R-AA8I-01A
66 years, male, white, stage:ii, dead, 262 days
692.8
TCGA-DD-AAEI-01A
72 years, male, asian, stage:i, alive, 1531 days
691.6
TCGA-2Y-A9H9-01A
70 years, male, white, stage:i, alive, 697 days
687.6
TCGA-DD-AADY-01A
55 years, female, asian, stage:i, alive, 555 days
680.1
TCGA-CC-A8HS-01A
18 years, male, asian, stage:iiic, dead, 300 days
674.4
TCGA-DD-AADO-01A
55 years, male, asian, stage:i, alive, 453 days
673.8
TCGA-DD-A1EA-01A
68 years, male, asian, stage:ii, alive, 2415 days
670.4
TCGA-DD-AADL-01A
58 years, male, asian, stage:i, alive, 636 days
665.9
TCGA-CC-5263-01A
35 years, male, asian, stage:iiia, dead, 129 days
660.4
TCGA-LG-A9QC-01A
48 years, male, white, stage:i, alive, 425 days
659.2
TCGA-DD-A1EB-01A
72 years, female, stage:i, alive, 2017 days
658.7
TCGA-BC-4072-01B
74 years, female, white, stage:iiia, dead, 1490 days
658.4
TCGA-BC-A10U-01A
69 years, male, white, dead, 837 days
653.5
TCGA-DD-AACA-01A
65 years, male, asian, stage:i, alive, 2301 days
652.7
TCGA-DD-A4NP-01A
32 years, male, white, stage:i, alive, 3308 days
651.3
TCGA-DD-A1ED-01A
68 years, male, white, stage:i, alive, 2301 days
649.9
TCGA-DD-A4NR-01A
85 years, female, white, stage:i, dead, 9 days
649.2
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:ii, dead, 415 days
643.1
TCGA-G3-AAV2-01A
50 years, male, white, stage:i, alive, 372 days
641.9
TCGA-DD-AAEA-01A
65 years, male, asian, stage:i, alive, 575 days
640.4
TCGA-DD-AAW3-01A
69 years, male, asian, stage:i, alive, 1633 days
638.9
TCGA-DD-A1EE-01A
73 years, male, white, stage:iiia, dead, 349 days
637.0
TCGA-DD-A4NL-01A
46 years, male, white, stage:i, alive, 1711 days
635.3
TCGA-RC-A7S9-01A
47 years, female, asian, stage:i, alive, 640 days
635.0
TCGA-DD-AADC-01A
53 years, male, asian, stage:i, dead, 425 days
631.2
TCGA-DD-AACW-01A
43 years, male, asian, stage:i, alive, 1424 days
630.3
TCGA-DD-AAD8-01A
73 years, female, asian, stage:i, alive, 1219 days
628.9
TCGA-DD-AAE6-01A
59 years, female, asian, stage:i, alive, 141 days
624.8
TCGA-ZS-A9CF-01A
64 years, male, white, stage:ii, alive, 2412 days
618.9
TCGA-DD-AADU-01A
60 years, male, asian, stage:ii, alive, 554 days
617.6
TCGA-ED-A97K-01A
54 years, male, asian, stage:iiia, alive, 6 days
613.3
TCGA-BC-A10T-01A
76 years, male, white, dead, 837 days
608.8
TCGA-ED-A7XO-01A
29 years, male, asian, stage:iiia, alive, 427 days
605.9
TCGA-2Y-A9GS-01A
58 years, male, white, dead, 724 days
604.8
TCGA-DD-AAEE-01A
55 years, male, asian, stage:i, alive, 810 days
601.3
TCGA-DD-A4NS-01A
62 years, female, white, stage:i, dead, 2456 days
599.6
TCGA-WX-AA44-01A
64 years, female, white, stage:i, alive, 615 days
598.8
TCGA-5C-AAPD-01A
61 years, male, asian, stage:ii, alive, 20 days
598.5
TCGA-DD-A11B-01A
73 years, male, white, stage:i, dead, 14 days
583.9
TCGA-DD-A3A8-01A
75 years, male, white, stage:ii, dead, 11 days
581.7
TCGA-CC-A8HT-01A
74 years, male, asian, stage:iiia, dead, 140 days
580.5
TCGA-G3-A3CH-01A
53 years, male, asian, stage:iiia, alive, 780 days
578.7
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:iiia, alive, 20 days
578.1
TCGA-BC-A10Y-01A
76 years, male, white, dead, 711 days
576.8
TCGA-DD-AAW2-01A
69 years, male, asian, stage:i, alive, 1855 days
575.8
TCGA-CC-5258-01A
48 years, male, asian, stage:ii, dead, 129 days
571.6
TCGA-DD-A4NA-01A
67 years, female, white, stage:iiic, alive, 1008 days
566.8
TCGA-ZS-A9CG-01A
55 years, male, white, stage:ii, alive, 341 days
566.4
TCGA-DD-A73F-01A
77 years, female, white, stage:i, alive, 1085 days
565.1
TCGA-DD-AAED-01A
51 years, male, asian, stage:i, alive, 763 days
564.5
TCGA-G3-A25T-01A
45 years, female, white, stage:iiia, alive, 1553 days
563.8
TCGA-DD-AACJ-01A
75 years, male, asian, stage:ii, alive, 2102 days
562.2
TCGA-FV-A3I0-01A
76 years, female, white, stage:ii, alive, 848 days
557.2
TCGA-ED-A66X-01A
35 years, male, asian, stage:iiia, alive, 406 days
553.2
TCGA-HP-A5N0-01A
88 years, female, dead, 1147 days
548.8
TCGA-DD-AADV-01A
50 years, male, asian, stage:i, alive, 574 days
548.7
TCGA-XR-A8TF-01A
74 years, male, white, stage:i, dead, 693 days
544.6
TCGA-XR-A8TD-01A
49 years, female, white, stage:iiib, alive, 1030 days
541.7
TCGA-FV-A3I1-01A
female, white, stage:ii, dead, 247 days
540.5
TCGA-BC-A216-01A
62 years, female, white, stage:iiia, alive, 1351 days
538.1
TCGA-DD-A4NB-01A
25 years, male, white, stage:i, alive, 989 days
537.9
TCGA-WJ-A86L-01A
68 years, female, white, stage:i, alive, 345 days
535.6
TCGA-DD-AAVW-01A
35 years, male, asian, stage:i, alive, 2317 days
533.7
TCGA-DD-AADA-01A
66 years, female, asian, stage:i, alive, 1233 days
531.3
TCGA-G3-AAV3-01A
58 years, female, white, stage:ii, alive, 412 days
529.8
TCGA-2Y-A9GT-01A
51 years, male, white, stage:i, dead, 1624 days
528.9
TCGA-BC-A10W-01A
50 years, male, asian, dead, 91 days
518.0
TCGA-5R-AA1C-01A
57 years, male, white, stage:ii, alive, 520 days
515.2
TCGA-BC-A10X-01A
52 years, female, white, stage:iiia, dead, 770 days
514.7
TCGA-2Y-A9GX-01A
68 years, male, white, stage:i, alive, 2442 days
514.5
TCGA-DD-A4NE-01A
75 years, female, white, stage:iiia, dead, 660 days
514.1
TCGA-DD-AADR-01A
58 years, male, asian, stage:i, alive, 2028 days
513.3
TCGA-ED-A4XI-01A
58 years, male, asian, stage:ii, alive, 819 days
511.9
TCGA-DD-A1EK-01A
64 years, female, white, stage:ivb, dead, 558 days
509.2
TCGA-CC-A3MA-01A
61 years, male, asian, stage:iiia, dead, 303 days
505.0
TCGA-G3-A7M9-01A
70 years, male, white, stage:iiib, dead, 56 days
503.4
TCGA-G3-AAV7-01A
38 years, male, asian, stage:ii, alive, 361 days
499.1
TCGA-G3-A25X-01A
73 years, male, asian, stage:ii, alive, 1779 days
498.8
TCGA-FV-A496-01A
84 years, female, white, stage:i, alive, 10 days
497.5
TCGA-DD-A11D-01A
57 years, female, white, stage:i, dead, 1560 days
495.0
TCGA-XR-A8TC-01A
43 years, female, white, stage:i, alive, 1339 days
488.9
TCGA-RC-A6M4-01A
74 years, female, white, stage:iiia, alive, 22 days
472.9
TCGA-EP-A26S-01A
70 years, male, white, stage:i, alive, 608 days
471.0
TCGA-DD-AAD3-01A
43 years, male, asian, stage:i, alive, 1295 days
470.0
TCGA-G3-A5SK-01A
58 years, male, white, stage:i, alive, 744 days
469.4
TCGA-ED-A8O5-01A
59 years, female, asian, stage:iiia, alive, 406 days
468.9
TCGA-G3-A5SL-01A
70 years, male, white, stage:ii, alive, 621 days
461.6
TCGA-GJ-A6C0-01A
75 years, female, white, stage:ii, dead, 31 days
459.4
TCGA-G3-AAV1-01A
51 years, male, asian, stage:iiic, dead, 359 days
455.9
TCGA-GJ-A9DB-01A
68 years, male, white, stage:i, dead, 67 days
450.2
TCGA-DD-A4NF-01A
72 years, male, white, stage:i, alive, 942 days
448.2
TCGA-CC-A3M9-01A
45 years, male, asian, stage:iiia, dead, 300 days
447.3
TCGA-UB-A7MA-01A
62 years, female, white, stage:ii, alive, 848 days
447.0
TCGA-CC-A7IL-01A
61 years, male, asian, stage:iiia, dead, 278 days
446.5
TCGA-G3-A7M6-01A
60 years, female, white, stage:i, alive, 632 days
445.8
TCGA-DD-A73A-01A
71 years, male, white, stage:i, alive, 728 days
441.0
TCGA-XR-A8TE-01A
16 years, male, white, stage:iiia, alive, 925 days
440.1
TCGA-DD-AAE3-01A
50 years, male, asian, stage:i, alive, 566 days
430.0
TCGA-G3-AAV5-01A
67 years, male, white, stage:ii, alive, 354 days
419.7
TCGA-2Y-A9H3-01A
45 years, male, white, stage:ii, alive, 1516 days
418.9
TCGA-CC-5261-01A
44 years, male, asian, stage:ii, dead, 97 days
409.5
TCGA-DD-AACZ-01A
63 years, female, asian, stage:i, dead, 171 days
407.8
TCGA-ZP-A9D4-01A
64 years, female, white, alive, 395 days
405.8
TCGA-NI-A8LF-01A
74 years, male, white, stage:i, alive, 799 days
399.0
TCGA-DD-A4NK-01A
80 years, female, white, stage:iiia, dead, 1210 days
398.2
TCGA-UB-A7MC-01A
59 years, male, white, stage:iiia, alive, 500 days
393.8
TCGA-G3-A7M5-01A
76 years, male, asian, stage:i, alive, 447 days
393.1
TCGA-CC-5260-01A
61 years, female, asian, stage:iiic, dead, 87 days
392.5
TCGA-DD-AAEK-01A
51 years, male, asian, stage:ii, alive, 1067 days
392.2
TCGA-DD-AAE2-01A
51 years, male, asian, stage:i, alive, 638 days
392.1
TCGA-G3-A6UC-01A
65 years, male, white, stage:iiib, alive, 671 days
387.2
TCGA-DD-AACP-01A
65 years, male, asian, stage:i, alive, 415 days
385.0
TCGA-DD-A4NV-01A
61 years, male, white, stage:iiia, alive, 2398 days
377.0
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:ii, alive, 1098 days
374.9
TCGA-ZP-A9CZ-01A
72 years, male, asian, alive, 706 days
374.7
TCGA-DD-A39W-01A
29 years, female, white, stage:iii, dead, 827 days
374.3
TCGA-DD-A4ND-01A
56 years, female, white, stage:i, alive, 2746 days
368.0
TCGA-2Y-A9HA-01A
70 years, male, white, stage:ii, dead, 36 days
367.9
TCGA-DD-AACE-01A
62 years, male, asian, stage:i, alive, 2184 days
353.8
TCGA-G3-A5SJ-01A
59 years, male, white, stage:i, alive, 698 days
353.7
TCGA-WX-AA46-01A
62 years, male, white, stage:ii, alive, 756 days
352.2
TCGA-ED-A8O6-01A
50 years, female, asian, stage:iiia, dead, 56 days
342.6
TCGA-BC-A8YO-01A
66 years, female, white, stage:iiic, alive, 562 days
342.4
TCGA-CC-A7IF-01A
59 years, male, asian, stage:iiia, dead, 649 days
340.7
TCGA-DD-AADG-01A
70 years, male, asian, stage:iiia, alive, 1145 days
337.8
TCGA-DD-AAE7-01A
72 years, male, asian, stage:i, alive, 644 days
331.6
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:ii, dead, 848 days
324.0
TCGA-CC-A7IK-01A
59 years, male, asian, stage:iiia, dead, 262 days
320.8
TCGA-DD-A113-01A
55 years, female, white, stage:ii, alive, 2425 days
319.6
TCGA-DD-AADW-01A
48 years, male, asian, stage:i, alive, 587 days
312.8
TCGA-BC-A112-01A
80 years, male, white, dead, 153 days
310.4
TCGA-FV-A3R3-01A
38 years, female, white, stage:i, dead, 366 days
309.7
TCGA-DD-A4NI-01A
67 years, male, white, stage:ii, alive, 816 days
309.2
TCGA-G3-AAV0-01A
58 years, male, asian, stage:i, alive, 476 days
309.2
TCGA-UB-AA0V-01A
69 years, female, white, stage:i, alive, 314 days
306.0
TCGA-DD-A1EJ-01A
71 years, female, white, stage:iiic, dead, 1005 days
304.6
TCGA-2Y-A9H8-01A
85 years, female, white, dead, 633 days
303.4
TCGA-DD-A73D-01A
68 years, female, white, stage:ii, alive, 693 days
296.5
TCGA-ZP-A9D0-01A
67 years, female, black or african american, alive, 1091 days
295.3
TCGA-ZS-A9CE-01A
79 years, female, white, stage:ii, alive, 1241 days
290.0
TCGA-NI-A4U2-01A
71 years, male, white, stage:iiia, dead, 1791 days
288.8
TCGA-UB-A7MB-01A
24 years, male, white, stage:ii, alive, 601 days
282.6
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:ii, alive, 94 days
275.0
TCGA-RC-A7SB-01A
53 years, male, asian, stage:ii, alive, 588 days
272.8
TCGA-BC-A10Q-01A
72 years, female, white, dead, 1135 days
272.5
TCGA-2Y-A9H6-01A
68 years, female, white, stage:i, alive, 357 days
271.0
TCGA-DD-A3A2-01A
76 years, female, white, stage:i, dead, 2131 days
264.3
TCGA-CC-A5UC-01A
63 years, male, asian, stage:iiia, dead, 347 days
263.3
TCGA-DD-A73C-01A
65 years, female, white, stage:iiia, alive, 701 days
263.2
TCGA-G3-A25U-01A
63 years, female, asian, stage:i, alive, 1636 days
251.4
TCGA-BC-A10Z-01A
62 years, female, white, stage:i, dead, 34 days
242.7
TCGA-DD-A73E-01A
66 years, male, white, stage:i, alive, 44 days
239.2
TCGA-DD-AAD6-01A
66 years, male, asian, stage:iiia, alive, 672 days
238.0
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:ii, alive, 6 days
229.8
TCGA-WQ-A9G7-01A
female, white, alive, 30 days
224.6
TCGA-BC-A3KG-01A
68 years, female, white, stage:ii, alive, 680 days
223.0
TCGA-DD-A118-01A
77 years, female, white, stage:ii, alive, 3437 days
217.0
TCGA-G3-A3CI-01A
71 years, male, white, stage:i, alive, 180 days
215.0
TCGA-G3-AAV6-01A
53 years, female, white, stage:iiia, dead, 65 days
209.0
TCGA-5C-A9VG-01A
58 years, male, white, stage:ii, alive, 328 days
207.1
TCGA-CC-A8HU-01A
39 years, female, asian, stage:iiia, dead, 344 days
199.0
TCGA-G3-A7M8-01A
31 years, male, asian, stage:i, alive, 430 days
180.4
TCGA-MR-A520-01A
58 years, male, white, stage:i, alive, 229 days
162.4
TCGA-2Y-A9GU-01A
55 years, female, white, stage:i, alive, 1939 days
140.9
TCGA-DD-A1EF-01A
57 years, female, white, stage:i, dead, 394 days
106.0
TCGA-DD-AADD-01A
51 years, male, asian, stage:i, alive, 1231 days
102.6
TCGA-ED-A66Y-01A
51 years, female, asian, stage:iiia, dead, 296 days
51.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
