HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:492.6 nTPM
HPA Brain:795.0 nTPM
GTEx:492.6 nTPM
FANTOM5:750.5 Scaled Tags Per Million
Pig:565.4 nTPM
Mouse:995.1 nTPM
Allen mouse:19.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001462Antibody CAB000157
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 795.0
Sample id Sample description nTPM
Hippocampus
nTPM: 608.6
1898 Male, age 80, left hemisphere 750.8
2621 Female, age 67, right hemisphere 677.6
1855 Male, age 76, left hemisphere 637.3
2529 Female, age 94, left hemisphere 554.3
1911 Female, age 85, right hemisphere 542.0
2148 Female, age 91, left hemisphere 489.5
Dentate gyrus
nTPM: 638.2
2530 Female, age 94, left hemisphere 806.5
2010 Male, age 76, both hemispheres 715.4
2246 Female, age 85, both hemispheres 642.7
1927 Female, age 91, both hemispheres 603.9
2531 Female, age 67, both hemispheres 573.3
2528 Male, age 74, both hemispheres 487.1
Entorhinal gyrus
nTPM: 697.0
2764 Male, age 80, right hemisphere 821.0
1938 Female, age 85, left hemisphere 740.1
2613 Female, age 94, left hemisphere 733.3
1787 Male, age 76, left hemisphere 697.7
2117 Female, age 91, right hemisphere 637.9
2686 Male, age 75, right hemisphere 552.0
Hippocampus, CA1
nTPM: 697.7
2749 Male, age 80, left hemisphere 941.2
1873 Female, age 85, both hemispheres 666.2
2045 Male, age 76, both hemispheres 657.7
2082 Female, age 91, right hemisphere 631.9
2527 Male, age 74, both hemispheres 591.5
Hippocampus, CA2
nTPM: 657.5
1892 Male, age 76, both hemispheres 750.0
1963 Male, age 80, left hemisphere 736.3
1940 Female, age 85, left hemisphere 678.1
2437 Female, age 94, left hemisphere 614.2
2249 Male, age 74, both hemispheres 611.5
2113 Female, age 91, right hemisphere 555.2
Hippocampus, CA3
nTPM: 595.5
2137 Male, age 80, left hemisphere 736.0
1867 Male, age 76, both hemispheres 637.5
1891 Female, age 85, both hemispheres 598.0
2620 Female, age 94, left hemisphere 595.0
2436 Male, age 74, both hemispheres 581.0
2861 Female, age 67, both hemispheres 425.5
Parahippocampal cortex
nTPM: 648.1
1850 Male, age 80, both hemispheres 793.5
2532 Female, age 72, left hemisphere 771.5
2245 Female, age 91, both hemispheres 733.6
1933 Female, age 85, both hemispheres 717.6
1990 Female, age 91, right hemisphere 709.7
2250 Female, age 67, right hemisphere 662.2
2018 Male, age 76, both hemispheres 660.1
2693 Female, age 94, both hemispheres 506.9
2692 Male, age 74, both hemispheres 492.8
2622 Female, age 67, right hemisphere 433.6
Perirhinal gyrus
nTPM: 795.0
1847 Female, age 91, left hemisphere 869.1
1794 Male, age 80, right hemisphere 848.8
1841 Female, age 85, right hemisphere 805.1
2521 Female, age 94, right hemisphere 726.7
2848 Male, age 76, right hemisphere 725.5
Subiculum
nTPM: 615.9
1977 Female, age 85, both hemispheres 778.5
1901 Male, age 80, both hemispheres 715.3
2438 Female, age 94, left hemisphere 599.9
2042 Male, age 76, both hemispheres 597.4
2619 Male, age 74, both hemispheres 544.6
2729 Female, age 91, right hemisphere 459.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 492.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 492.6
Samples: 197

Max nTPM: 833.6
Min nTPM: 165.8
Std nTPM: 116.6
Median nTPM: 482.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 833.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 784.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 745.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 738.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 718.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 709.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 703.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 701.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 697.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 689.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 688.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 750.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 750.5
FF:10169-103B7 60 years, female 877.6
FF:10153-102I9 76 years, female 623.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 565.4
Pig sample Sample description nTPM
Subiculum
nTPM: 446.6
Samples: 4

Max nTPM: 570.4
Min nTPM: 386.2
Sample A Female 570.4
Sample B Female 386.2
Sample C Male 424.7
Sample D Male 405.0
Dorsal hippocampus
nTPM: 494.0
Samples: 4

Max nTPM: 638.5
Min nTPM: 332.6
Sample A Female 638.5
Sample B Female 517.2
Sample C Male 487.8
Sample D Male 332.6
Entorhinal cortex
nTPM: 565.5
Samples: 4

Max nTPM: 606.1
Min nTPM: 531.1
Sample A Female 606.1
Sample B Female 588.5
Sample C Male 536.1
Sample D Male 531.1
Ventral hippocampus
nTPM: 464.5
Samples: 4

Max nTPM: 539.6
Min nTPM: 298.6
Sample A Female 528.6
Sample B Female 298.6
Sample C Male 539.6
Sample D Male 491.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 995.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 959.9
Samples: 4

Max nTPM: 1065.2
Min nTPM: 874.1
Sample A Male 941.1
Sample B Male 959.2
Sample C Female 874.1
Sample D Female 1065.2
Hippocampal formation
nTPM: 995.1
Samples: 4

Max nTPM: 1155.9
Min nTPM: 852.5
Sample A Male 852.5
Sample B Male 1007.3
Sample C Female 1155.9
Sample D Female 964.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 19.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 19.0
79591705 Antisense, RP_071218_02_B09, Mouse strain C57BL/6J (56 days, male) 32.1
106 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 24.7
107 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 22.1
70611467 Antisense, RP_050630_03_C12, Mouse strain C57BL/6J (56 days, male) 0.1

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