HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:38.4 nTPM
HPA Brain:28.8 nTPM
GTEx:38.4 nTPM
FANTOM5:50.8 Scaled Tags Per Million
Pig:60.4 nTPM
Mouse:100.7 nTPM
Allen mouse:1.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041906Antibody HPA043552
Glial cells MediumNot detected
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.8
Sample id Sample description nTPM
Hippocampus
nTPM: 22.8
2148 Female, age 91, left hemisphere 25.2
1898 Male, age 80, left hemisphere 24.3
2529 Female, age 94, left hemisphere 24.3
2621 Female, age 67, right hemisphere 23.9
1855 Male, age 76, left hemisphere 20.9
1911 Female, age 85, right hemisphere 18.6
Dentate gyrus
nTPM: 25.8
2530 Female, age 94, left hemisphere 31.1
2531 Female, age 67, both hemispheres 26.1
2528 Male, age 74, both hemispheres 25.7
2010 Male, age 76, both hemispheres 25.3
2246 Female, age 85, both hemispheres 24.7
1927 Female, age 91, both hemispheres 22.1
Entorhinal gyrus
nTPM: 26.0
2613 Female, age 94, left hemisphere 32.5
2764 Male, age 80, right hemisphere 30.1
1938 Female, age 85, left hemisphere 25.3
2686 Male, age 75, right hemisphere 24.1
1787 Male, age 76, left hemisphere 23.4
2117 Female, age 91, right hemisphere 20.4
Hippocampus, CA1
nTPM: 25.6
2749 Male, age 80, left hemisphere 35.0
1873 Female, age 85, both hemispheres 27.8
2082 Female, age 91, right hemisphere 23.2
2045 Male, age 76, both hemispheres 23.1
2527 Male, age 74, both hemispheres 18.9
Hippocampus, CA2
nTPM: 22.4
1963 Male, age 80, left hemisphere 29.7
1892 Male, age 76, both hemispheres 28.2
2437 Female, age 94, left hemisphere 24.3
2113 Female, age 91, right hemisphere 19.4
2249 Male, age 74, both hemispheres 17.8
1940 Female, age 85, left hemisphere 15.4
Hippocampus, CA3
nTPM: 24.3
2620 Female, age 94, left hemisphere 33.1
2861 Female, age 67, both hemispheres 26.1
1867 Male, age 76, both hemispheres 23.9
2137 Male, age 80, left hemisphere 21.2
2436 Male, age 74, both hemispheres 20.8
1891 Female, age 85, both hemispheres 20.5
Parahippocampal cortex
nTPM: 26.0
1990 Female, age 91, right hemisphere 31.2
2532 Female, age 72, left hemisphere 30.0
1850 Male, age 80, both hemispheres 27.8
2622 Female, age 67, right hemisphere 27.6
2692 Male, age 74, both hemispheres 27.6
2245 Female, age 91, both hemispheres 25.9
2693 Female, age 94, both hemispheres 24.7
2018 Male, age 76, both hemispheres 23.4
2250 Female, age 67, right hemisphere 21.4
1933 Female, age 85, both hemispheres 20.5
Perirhinal gyrus
nTPM: 28.8
1794 Male, age 80, right hemisphere 34.5
2848 Male, age 76, right hemisphere 33.6
1847 Female, age 91, left hemisphere 28.3
1841 Female, age 85, right hemisphere 24.9
2521 Female, age 94, right hemisphere 22.6
Subiculum
nTPM: 22.7
1977 Female, age 85, both hemispheres 27.8
2438 Female, age 94, left hemisphere 26.0
2619 Male, age 74, both hemispheres 25.3
1901 Male, age 80, both hemispheres 20.7
2042 Male, age 76, both hemispheres 19.2
2729 Female, age 91, right hemisphere 17.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.4
Samples: 197

Max nTPM: 73.4
Min nTPM: 20.4
Std nTPM: 9.6
Median nTPM: 36.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 73.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 70.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 64.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 63.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 62.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 61.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 61.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 61.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 59.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 59.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 59.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 50.8
FF:10169-103B7 60 years, female 55.0
FF:10153-102I9 76 years, female 46.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 60.4
Pig sample Sample description nTPM
Subiculum
nTPM: 53.3
Samples: 4

Max nTPM: 77.5
Min nTPM: 40.5
Sample A Female 77.5
Sample B Female 49.6
Sample C Male 45.4
Sample D Male 40.5
Dorsal hippocampus
nTPM: 59.7
Samples: 4

Max nTPM: 72.3
Min nTPM: 47.8
Sample A Female 72.3
Sample B Female 60.8
Sample C Male 57.9
Sample D Male 47.8
Entorhinal cortex
nTPM: 60.4
Samples: 4

Max nTPM: 71.6
Min nTPM: 48.5
Sample A Female 61.6
Sample B Female 71.6
Sample C Male 59.7
Sample D Male 48.5
Ventral hippocampus
nTPM: 56.8
Samples: 4

Max nTPM: 60.9
Min nTPM: 50.0
Sample A Female 55.4
Sample B Female 50.0
Sample C Male 60.8
Sample D Male 60.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 100.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 100.7
Samples: 4

Max nTPM: 111.1
Min nTPM: 94.4
Sample A Male 94.4
Sample B Male 98.8
Sample C Female 98.6
Sample D Female 111.1
Hippocampal formation
nTPM: 91.9
Samples: 4

Max nTPM: 93.6
Min nTPM: 90.2
Sample A Male 93.6
Sample B Male 90.2
Sample C Female 92.5
Sample D Female 91.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
70194534 Antisense, RP_050517_01_E12, Mouse strain C57BL/6J (56 days, male) 1.3

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