MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.2 nTPM
HPA Brain:28.4 nTPM
GTEx:37.2 nTPM
FANTOM5:38.1 Scaled Tags Per Million
Pig:63.0 nTPM
Mouse:83.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.9
2666 Male, age 74, left hemisphere 30.3
2411 Female, age 72, unknown 27.0
2586 Male, age 75, left hemisphere 25.6
1833 Male, age 53, unknown 25.2
1827 Male, age 72, unknown 23.8
2219 Male, age 76, both hemispheres 23.5
2828 Female, age 72, unknown 22.8
1870 Female, age 42, unknown 21.6
2019 Male, age 18, unknown 19.7
1830 Male, age 51, unknown 19.6
Dorsal raphe nucleus
nTPM: 21.3
2750 Male, age 76, both hemispheres 22.4
1828 Male, age 53, unknown 22.0
2047 Male, age 72, unknown 21.9
2298 Female, age 72, unknown 21.7
2016 Female, age 72, unknown 18.7
Inferior colliculus
nTPM: 22.8
2849 Male, age 72, unknown 28.2
1848 Female, age 42, unknown 24.0
1890 Male, age 53, unknown 20.8
2097 Female, age 72, unknown 18.3
Median raphe nucleus
nTPM: 26.5
2220 Male, age 76, midline 26.5
Periaquaductal grey, anterior
nTPM: 28.4
2502 Female, age 75, unknown 30.9
1947 Male, age 18, unknown 29.3
1795 Male, age 51, unknown 25.1
Periaquaductal grey, dorsal
nTPM: 20.1
2464 Female, age 72, unknown 22.8
1840 Male, age 53, unknown 21.6
2850 Male, age 76, both hemispheres 21.1
1831 Male, age 72, unknown 14.6
Periaquaductal grey, lateral
nTPM: 19.0
2140 Male, age 76, both hemispheres 22.1
2053 Male, age 18, unknown 18.3
2272 Male, age 74, both hemispheres 16.7
Pretectal area
nTPM: 20.4
1816 Male, age 51, unknown 25.9
2007 Male, age 72, unknown 25.0
1817 Female, age 42, unknown 23.5
2825 Male, age 18, unknown 23.0
2224 Female, age 72, unknown 20.8
2316 Male, age 76, right hemisphere 20.6
2667 Female, age 75, unknown 20.1
1815 Male, age 53, unknown 19.6
2407 Male, age 75, both hemispheres 16.1
1944 Female, age 72, unknown 16.0
2273 Male, age 74, both hemispheres 13.8
Red nucleus
nTPM: 22.0
2588 Male, age 74, left hemisphere 26.4
2584 Male, age 75, left hemisphere 25.7
1821 Female, age 72, unknown 23.2
2725 Female, age 75, unknown 22.8
2227 Male, age 72, unknown 22.7
2769 Male, age 72, unknown 21.8
1904 Male, age 53, unknown 21.7
1865 Male, age 51, unknown 21.3
2503 Female, age 72, unknown 21.1
2785 Male, age 18, unknown 19.5
2823 Male, age 76, right hemisphere 19.2
1954 Female, age 42, unknown 18.7
Substantia nigra
nTPM: 23.1
1916 Female, age 42, unknown 28.8
1851 Male, age 51, unknown 26.8
2665 Male, age 74, both hemispheres 24.6
2699 Male, age 18, unknown 24.6
2241 Male, age 72, unknown 24.2
2583 Male, age 75, right hemisphere 23.0
1941 Male, age 53, unknown 22.0
1889 Female, age 72, unknown 20.6
2409 Female, age 72, unknown 20.0
2590 Female, age 75, unknown 16.2
Superior colliculus
nTPM: 21.6
2668 Female, age 75, unknown 26.4
1796 Male, age 53, unknown 23.6
2261 Male, age 18, unknown 23.3
1839 Male, age 51, unknown 23.1
1895 Male, age 76, right hemisphere 22.7
2587 Male, age 74, left hemisphere 22.1
2664 Male, age 75, both hemispheres 20.8
2087 Female, age 72, unknown 19.2
1913 Female, age 42, unknown 18.1
1995 Male, age 72, unknown 16.3
Ventral tegmental area
nTPM: 23.8
2410 Female, age 72, unknown 29.8
1915 Female, age 42, unknown 26.7
2218 Male, age 76, both hemispheres 22.8
2223 Female, age 72, unknown 22.7
2021 Male, age 53, unknown 20.8
1942 Male, age 51, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.2
Samples: 139

Max nTPM: 66.2
Min nTPM: 25.5
Std nTPM: 7.1
Median nTPM: 36.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 66.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 60.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 58.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 57.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 56.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 49.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 49.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 48.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 47.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 47.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.1
FF:10158-103A5 76 years, female 38.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.0
Samples: 4

Max nTPM: 79.2
Min nTPM: 49.6
Sample A Female 79.2
Sample B Female 55.1
Sample C Male 68.1
Sample D Male 49.6
Midbrain
nTPM: 58.0
Samples: 4

Max nTPM: 65.8
Min nTPM: 49.2
Sample A Female 57.5
Sample B Female 65.8
Sample C Male 49.2
Sample D Male 59.3
Periaqueductal gray
nTPM: 52.8
Samples: 3

Max nTPM: 59.9
Min nTPM: 44.7
Sample B Female 53.9
Sample C Male 59.9
Sample D Male 44.7
Superior colliculi
nTPM: 51.5
Samples: 4

Max nTPM: 66.0
Min nTPM: 39.9
Sample A Female 66.0
Sample B Female 39.9
Sample C Male 49.6
Sample D Male 50.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.8
Samples: 4

Max nTPM: 88.4
Min nTPM: 80.0
Sample A Male 80.0
Sample B Male 84.6
Sample C Female 88.4
Sample D Female 82.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70194534 Antisense, RP_050517_01_E12, Mouse strain C57BL/6J (56 days, male) 0.4

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