MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.4 nTPM
HPA Brain:24.8 nTPM
GTEx:13.4 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:9.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.1
2586 Male, age 75, left hemisphere 35.5
2828 Female, age 72, unknown 28.6
2666 Male, age 74, left hemisphere 24.6
2019 Male, age 18, unknown 24.3
1833 Male, age 53, unknown 23.8
1870 Female, age 42, unknown 22.7
1830 Male, age 51, unknown 22.3
1827 Male, age 72, unknown 20.6
2411 Female, age 72, unknown 20.0
2219 Male, age 76, both hemispheres 18.9
Dorsal raphe nucleus
nTPM: 22.1
1828 Male, age 53, unknown 24.8
2750 Male, age 76, both hemispheres 23.6
2047 Male, age 72, unknown 21.1
2016 Female, age 72, unknown 20.6
2298 Female, age 72, unknown 20.4
Inferior colliculus
nTPM: 22.0
2849 Male, age 72, unknown 23.1
1848 Female, age 42, unknown 22.1
1890 Male, age 53, unknown 22.0
2097 Female, age 72, unknown 20.9
Median raphe nucleus
nTPM: 20.6
2220 Male, age 76, midline 20.6
Periaquaductal grey, anterior
nTPM: 24.1
1795 Male, age 51, unknown 25.8
2502 Female, age 75, unknown 25.3
1947 Male, age 18, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 21.0
2850 Male, age 76, both hemispheres 23.4
1831 Male, age 72, unknown 21.7
2464 Female, age 72, unknown 19.8
1840 Male, age 53, unknown 19.0
Periaquaductal grey, lateral
nTPM: 21.7
2140 Male, age 76, both hemispheres 22.8
2272 Male, age 74, both hemispheres 22.5
2053 Male, age 18, unknown 19.9
Pretectal area
nTPM: 23.9
2007 Male, age 72, unknown 26.8
2667 Female, age 75, unknown 26.2
2316 Male, age 76, right hemisphere 25.6
1817 Female, age 42, unknown 25.3
1815 Male, age 53, unknown 25.1
2407 Male, age 75, both hemispheres 25.0
1816 Male, age 51, unknown 23.4
2273 Male, age 74, both hemispheres 22.7
1944 Female, age 72, unknown 22.3
2825 Male, age 18, unknown 21.3
2224 Female, age 72, unknown 19.3
Red nucleus
nTPM: 24.8
2584 Male, age 75, left hemisphere 29.5
2227 Male, age 72, unknown 28.7
2785 Male, age 18, unknown 28.1
2769 Male, age 72, unknown 27.3
2503 Female, age 72, unknown 24.3
2725 Female, age 75, unknown 24.3
2588 Male, age 74, left hemisphere 23.6
1904 Male, age 53, unknown 23.3
1865 Male, age 51, unknown 22.8
1821 Female, age 72, unknown 22.2
1954 Female, age 42, unknown 22.2
2823 Male, age 76, right hemisphere 21.6
Substantia nigra
nTPM: 22.6
2583 Male, age 75, right hemisphere 27.9
2699 Male, age 18, unknown 26.4
1916 Female, age 42, unknown 26.2
2665 Male, age 74, both hemispheres 25.3
1851 Male, age 51, unknown 25.1
1889 Female, age 72, unknown 21.5
1941 Male, age 53, unknown 21.5
2590 Female, age 75, unknown 19.8
2241 Male, age 72, unknown 16.5
2409 Female, age 72, unknown 16.1
Superior colliculus
nTPM: 24.1
2664 Male, age 75, both hemispheres 32.5
1796 Male, age 53, unknown 24.7
1995 Male, age 72, unknown 24.6
1913 Female, age 42, unknown 24.5
2261 Male, age 18, unknown 23.8
2668 Female, age 75, unknown 23.5
2087 Female, age 72, unknown 23.4
1839 Male, age 51, unknown 22.9
2587 Male, age 74, left hemisphere 20.7
1895 Male, age 76, right hemisphere 20.0
Ventral tegmental area
nTPM: 22.4
1915 Female, age 42, unknown 23.8
2218 Male, age 76, both hemispheres 23.4
1942 Male, age 51, unknown 22.6
2223 Female, age 72, unknown 22.4
2021 Male, age 53, unknown 21.9
2410 Female, age 72, unknown 20.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.4
Samples: 139

Max nTPM: 22.0
Min nTPM: 5.4
Std nTPM: 2.8
Median nTPM: 13.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 22.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 19.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 18.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 18.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 18.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 18.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 18.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 17.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 17.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.9
FF:10158-103A5 76 years, female 18.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.5
Samples: 4

Max nTPM: 9.7
Min nTPM: 6.5
Sample A Female 9.7
Sample B Female 8.7
Sample C Male 6.5
Sample D Male 9.1
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.2
Sample A Female 10.5
Sample B Female 7.7
Sample C Male 7.2
Sample D Male 8.0
Periaqueductal gray
nTPM: 7.6
Samples: 3

Max nTPM: 8.3
Min nTPM: 6.6
Sample B Female 8.3
Sample C Male 8.0
Sample D Male 6.6
Superior colliculi
nTPM: 9.7
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.3
Sample A Female 11.0
Sample B Female 11.1
Sample C Male 8.3
Sample D Male 8.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 11.8
Min nTPM: 7.3
Sample A Male 11.8
Sample B Male 10.5
Sample C Female 9.7
Sample D Female 7.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71378665 Antisense, RP_050519_01_A05, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org