MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1077.8 nTPM
HPA Brain:404.2 nTPM
GTEx:1077.8 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:829.6 nTPM
Allen mouse:19.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 404.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 385.6
2586 Male, age 75, left hemisphere 467.8
2666 Male, age 74, left hemisphere 442.2
2828 Female, age 72, unknown 421.9
2411 Female, age 72, unknown 419.8
1870 Female, age 42, unknown 394.5
1833 Male, age 53, unknown 363.5
1827 Male, age 72, unknown 361.1
1830 Male, age 51, unknown 345.4
2019 Male, age 18, unknown 328.3
2219 Male, age 76, both hemispheres 311.5
Dorsal raphe nucleus
nTPM: 372.1
2016 Female, age 72, unknown 420.8
2298 Female, age 72, unknown 411.8
2750 Male, age 76, both hemispheres 362.8
1828 Male, age 53, unknown 347.4
2047 Male, age 72, unknown 317.5
Inferior colliculus
nTPM: 350.5
1890 Male, age 53, unknown 376.4
2849 Male, age 72, unknown 357.7
2097 Female, age 72, unknown 337.6
1848 Female, age 42, unknown 330.2
Median raphe nucleus
nTPM: 321.8
2220 Male, age 76, midline 321.8
Periaquaductal grey, anterior
nTPM: 365.4
2502 Female, age 75, unknown 429.5
1795 Male, age 51, unknown 354.0
1947 Male, age 18, unknown 312.5
Periaquaductal grey, dorsal
nTPM: 359.5
1840 Male, age 53, unknown 386.2
2464 Female, age 72, unknown 369.2
1831 Male, age 72, unknown 368.6
2850 Male, age 76, both hemispheres 314.1
Periaquaductal grey, lateral
nTPM: 321.4
2053 Male, age 18, unknown 376.2
2140 Male, age 76, both hemispheres 319.6
2272 Male, age 74, both hemispheres 268.3
Pretectal area
nTPM: 324.6
2316 Male, age 76, right hemisphere 391.7
2825 Male, age 18, unknown 359.1
2007 Male, age 72, unknown 343.5
2224 Female, age 72, unknown 339.4
1815 Male, age 53, unknown 339.2
1817 Female, age 42, unknown 329.9
2407 Male, age 75, both hemispheres 323.2
1816 Male, age 51, unknown 315.8
2667 Female, age 75, unknown 294.1
2273 Male, age 74, both hemispheres 272.7
1944 Female, age 72, unknown 261.9
Red nucleus
nTPM: 404.2
2503 Female, age 72, unknown 505.0
2769 Male, age 72, unknown 442.6
2227 Male, age 72, unknown 431.2
1865 Male, age 51, unknown 429.3
1821 Female, age 72, unknown 426.5
2584 Male, age 75, left hemisphere 415.2
1904 Male, age 53, unknown 414.3
2588 Male, age 74, left hemisphere 383.2
2725 Female, age 75, unknown 366.7
2785 Male, age 18, unknown 361.9
1954 Female, age 42, unknown 349.4
2823 Male, age 76, right hemisphere 324.7
Substantia nigra
nTPM: 388.6
2699 Male, age 18, unknown 505.4
1851 Male, age 51, unknown 475.7
2665 Male, age 74, both hemispheres 466.1
2590 Female, age 75, unknown 401.9
1916 Female, age 42, unknown 386.5
2583 Male, age 75, right hemisphere 374.0
2409 Female, age 72, unknown 346.8
1889 Female, age 72, unknown 326.2
1941 Male, age 53, unknown 308.1
2241 Male, age 72, unknown 295.6
Superior colliculus
nTPM: 381.9
1995 Male, age 72, unknown 455.2
2664 Male, age 75, both hemispheres 451.1
2587 Male, age 74, left hemisphere 443.2
1913 Female, age 42, unknown 422.6
1796 Male, age 53, unknown 386.7
1839 Male, age 51, unknown 365.1
2668 Female, age 75, unknown 363.9
2261 Male, age 18, unknown 325.3
2087 Female, age 72, unknown 303.6
1895 Male, age 76, right hemisphere 302.1
Ventral tegmental area
nTPM: 389.7
1915 Female, age 42, unknown 449.5
2021 Male, age 53, unknown 418.7
2410 Female, age 72, unknown 407.0
2223 Female, age 72, unknown 382.5
1942 Male, age 51, unknown 349.0
2218 Male, age 76, both hemispheres 331.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1077.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1077.8
Samples: 139

Max nTPM: 2998.3
Min nTPM: 357.0
Std nTPM: 399.4
Median nTPM: 1033.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2998.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2531.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2419.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1939.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1926.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1896.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1802.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1715.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1701.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1615.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1614.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.9
FF:10158-103A5 76 years, female 103.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 9.9
Min nTPM: 6.6
Sample A Female 9.9
Sample B Female 7.2
Sample C Male 6.6
Sample D Male 7.1
Midbrain
nTPM: 8.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 4.8
Sample A Female 13.4
Sample B Female 8.9
Sample C Male 6.8
Sample D Male 4.8
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 7.1
Min nTPM: 5.8
Sample B Female 6.9
Sample C Male 7.1
Sample D Male 5.8
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 10.3
Min nTPM: 5.4
Sample A Female 10.3
Sample B Female 8.7
Sample C Male 5.4
Sample D Male 6.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 829.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 829.6
Samples: 4

Max nTPM: 1080.2
Min nTPM: 659.6
Sample A Male 1080.2
Sample B Male 792.2
Sample C Female 659.6
Sample D Female 786.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.0
71764512 Antisense, RP_050926_01_C10, Mouse strain C57BL/6J (56 days, male) 19.0

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