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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:9.3 nTPM
HPA Brain:13.0 nTPM
GTEx:9.3 nTPM
FANTOM5:2.4 Scaled Tags Per Million
Pig:26.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 13.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 11.0
2194 Female, age 79, both hemispheres 14.4
2816 Male, age 47, midline 11.1
2048 Male, age 55, midline 10.4
2565 Male, age 75, midline 10.0
1981 Female, age 72, midline 9.1
Cervical spinal cord, dorsal horn
nTPM: 9.6
2721 Male, age 90, both hemispheres 16.3
1877 Male, age 55, unknown 10.2
2069 Male, age 47, both hemispheres 9.7
2173 Female, age 72, unknown 8.6
2297 Male, age 75, both hemispheres 6.8
2296 Male, age 66, both hemispheres 5.9
Cervical spinal cord, ventral horn
nTPM: 13.0
2295 Male, age 66, both hemispheres 17.5
2809 Male, age 90, both hemispheres 14.4
2098 Female, age 72, unknown 14.2
2820 Female, age 79, both hemispheres 12.5
2068 Male, age 55, unknown 11.8
2480 Male, age 75, both hemispheres 7.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 9.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 9.3
Samples: 159

Max nTPM: 47.2
Min nTPM: 1.0
Std nTPM: 6.4
Median nTPM: 7.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 47.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 44.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 29.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 23.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 22.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 21.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 20.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 20.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 19.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 19.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 19.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 19.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 18.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 18.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 18.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 17.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 16.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 16.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 15.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 15.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 15.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 14.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 14.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 14.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 14.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 13.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 13.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 13.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 12.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 12.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 12.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 12.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 12.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 11.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 11.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 11.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 11.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 10.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 10.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 10.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 10.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 10.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 10.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 10.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 10.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 10.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 10.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 10.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 9.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 9.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 9.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 9.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 9.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 9.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 9.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 9.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 9.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 9.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 9.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 9.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 9.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 9.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 9.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 9.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 8.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 8.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 8.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 8.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 8.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 8.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 8.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 8.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 8.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 7.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 7.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 7.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 7.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 7.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 7.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 7.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 7.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 7.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 7.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 7.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 7.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 7.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 7.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 7.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 7.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 7.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 6.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 6.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 6.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 6.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 6.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 6.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 6.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 6.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 6.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 6.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 6.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 6.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 6.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 6.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 6.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 6.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 6.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 6.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 6.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 6.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 5.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 5.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 5.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 5.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 5.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 5.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 5.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 5.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 5.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 5.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 5.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 5.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 5.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 4.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 4.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 4.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 4.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 4.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 4.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 4.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 4.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 4.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 4.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 4.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 4.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 4.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 4.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 4.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 4.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 4.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 4.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 4.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 4.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 4.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 4.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 4.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 3.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 3.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 3.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 3.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 3.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 3.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 3.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 2.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2.4
FF:10159-103A6 76 years, female 2.5
FF:10181-103D1 60 years, female 2.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 26.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 26.2
Samples: 4

Max nTPM: 52.2
Min nTPM: 12.3
Sample A Female 12.3
Sample B Female 22.3
Sample C Male 52.2
Sample D Male 18.0
Ventral spinal cord
nTPM: 21.9
Samples: 4

Max nTPM: 29.4
Min nTPM: 15.3
Sample A Female 15.3
Sample B Female 22.2
Sample C Male 29.4
Sample D Male 20.8

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