HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:9.7 nTPM
HPA Brain:21.0 nTPM
GTEx:9.7 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:3.1 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005449Antibody HPA075145
Glial cells LowLow
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Hippocampus
nTPM: 20.8
1855 Male, age 76, left hemisphere 26.5
2621 Female, age 67, right hemisphere 24.2
1911 Female, age 85, right hemisphere 21.9
1898 Male, age 80, left hemisphere 18.9
2148 Female, age 91, left hemisphere 17.8
2529 Female, age 94, left hemisphere 15.2
Dentate gyrus
nTPM: 17.0
2010 Male, age 76, both hemispheres 21.4
2528 Male, age 74, both hemispheres 18.0
1927 Female, age 91, both hemispheres 16.9
2246 Female, age 85, both hemispheres 16.5
2531 Female, age 67, both hemispheres 15.6
2530 Female, age 94, left hemisphere 13.7
Entorhinal gyrus
nTPM: 15.2
2117 Female, age 91, right hemisphere 21.1
1787 Male, age 76, left hemisphere 17.0
2613 Female, age 94, left hemisphere 16.9
1938 Female, age 85, left hemisphere 13.6
2764 Male, age 80, right hemisphere 12.4
2686 Male, age 75, right hemisphere 10.6
Hippocampus, CA1
nTPM: 19.0
2045 Male, age 76, both hemispheres 26.3
2082 Female, age 91, right hemisphere 23.6
1873 Female, age 85, both hemispheres 19.1
2527 Male, age 74, both hemispheres 13.8
2749 Male, age 80, left hemisphere 12.1
Hippocampus, CA2
nTPM: 21.0
1940 Female, age 85, left hemisphere 30.8
2113 Female, age 91, right hemisphere 26.5
1892 Male, age 76, both hemispheres 19.4
2437 Female, age 94, left hemisphere 18.5
1963 Male, age 80, left hemisphere 16.2
2249 Male, age 74, both hemispheres 14.7
Hippocampus, CA3
nTPM: 15.9
1867 Male, age 76, both hemispheres 23.6
1891 Female, age 85, both hemispheres 17.7
2436 Male, age 74, both hemispheres 16.4
2137 Male, age 80, left hemisphere 13.4
2861 Female, age 67, both hemispheres 13.4
2620 Female, age 94, left hemisphere 10.9
Parahippocampal cortex
nTPM: 17.3
2018 Male, age 76, both hemispheres 34.0
2250 Female, age 67, right hemisphere 26.4
2693 Female, age 94, both hemispheres 18.2
2245 Female, age 91, both hemispheres 15.9
2532 Female, age 72, left hemisphere 13.7
1990 Female, age 91, right hemisphere 13.5
1933 Female, age 85, both hemispheres 13.2
2622 Female, age 67, right hemisphere 12.9
1850 Male, age 80, both hemispheres 12.5
2692 Male, age 74, both hemispheres 12.2
Perirhinal gyrus
nTPM: 14.2
2521 Female, age 94, right hemisphere 16.9
2848 Male, age 76, right hemisphere 14.8
1847 Female, age 91, left hemisphere 13.8
1841 Female, age 85, right hemisphere 13.2
1794 Male, age 80, right hemisphere 12.5
Subiculum
nTPM: 19.4
2042 Male, age 76, both hemispheres 29.2
2729 Female, age 91, right hemisphere 27.4
2619 Male, age 74, both hemispheres 17.6
1901 Male, age 80, both hemispheres 14.8
2438 Female, age 94, left hemisphere 14.0
1977 Female, age 85, both hemispheres 13.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.7
Samples: 197

Max nTPM: 54.0
Min nTPM: 0.6
Std nTPM: 9.4
Median nTPM: 7.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 54.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 50.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 50.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 49.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 41.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 39.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 36.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 33.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 28.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 27.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 26.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.4
FF:10169-103B7 60 years, female 49.8
FF:10153-102I9 76 years, female 42.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.2
Pig sample Sample description nTPM
Subiculum
nTPM: 6.7
Samples: 4

Max nTPM: 9.3
Min nTPM: 4.4
Sample A Female 9.3
Sample B Female 6.9
Sample C Male 4.4
Sample D Male 6.3
Dorsal hippocampus
nTPM: 8.2
Samples: 4

Max nTPM: 11.7
Min nTPM: 6.1
Sample A Female 11.7
Sample B Female 6.3
Sample C Male 8.6
Sample D Male 6.1
Entorhinal cortex
nTPM: 3.9
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.2
Sample A Female 4.4
Sample B Female 4.5
Sample C Male 3.6
Sample D Male 3.2
Ventral hippocampus
nTPM: 7.1
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.6
Sample A Female 7.6
Sample B Female 5.6
Sample C Male 6.7
Sample D Male 8.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.2
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.4
Sample A Male 3.5
Sample B Male 2.4
Sample C Female 2.9
Sample D Female 3.8
Hippocampal formation
nTPM: 2.3
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.9
Sample A Male 2.5
Sample B Male 2.5
Sample C Female 2.4
Sample D Female 1.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
2602 Antisense, RP_040526_02_E10, Mouse strain C57BL/6J (56 days, male) 0.5

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