HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		91.756
RNA expressioni
Consensus:40.2 nTPM
HPA Brain:51.7 nTPM
GTEx:40.2 nTPM
FANTOM5:40.4 Scaled Tags Per Million
Pig:45.4 nTPM
Mouse:28.0 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031314Antibody HPA031315
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA031314
Hippocampal formation mean intensity 91.756
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 54.951
Molecular layer of the dentate gyrus 41.603
Granular dentate gyrus 29.474
CA1 - oriens layer 24.839
CA1 - pyramidal layer 20.721
CA1 - radiatum layer 29.084
CA2 - oriens layer 32.689
CA2 - pyramidal layer 23.416
CA2 - radiatum layer 37.564
CA3 - oriens layer 25.776
CA3 - pyramidal layer 24.292
CA3 - radiatum layer 36.730
Stratum lucidum 40.199
Lacunosum moleculare 28.850
Subiculum 91.756

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.7
Sample id Sample description nTPM
Hippocampus
nTPM: 51.7
1855 Male, age 76, left hemisphere 60.1
1898 Male, age 80, left hemisphere 58.3
2529 Female, age 94, left hemisphere 51.6
2621 Female, age 67, right hemisphere 50.4
2148 Female, age 91, left hemisphere 49.2
1911 Female, age 85, right hemisphere 40.5
Dentate gyrus
nTPM: 47.4
2010 Male, age 76, both hemispheres 60.3
2528 Male, age 74, both hemispheres 47.7
2246 Female, age 85, both hemispheres 47.6
2530 Female, age 94, left hemisphere 47.0
1927 Female, age 91, both hemispheres 44.6
2531 Female, age 67, both hemispheres 37.3
Entorhinal gyrus
nTPM: 44.9
1938 Female, age 85, left hemisphere 49.0
1787 Male, age 76, left hemisphere 47.9
2117 Female, age 91, right hemisphere 47.3
2764 Male, age 80, right hemisphere 46.8
2613 Female, age 94, left hemisphere 39.6
2686 Male, age 75, right hemisphere 39.0
Hippocampus, CA1
nTPM: 50.6
2749 Male, age 80, left hemisphere 61.4
2527 Male, age 74, both hemispheres 55.8
1873 Female, age 85, both hemispheres 48.9
2045 Male, age 76, both hemispheres 44.6
2082 Female, age 91, right hemisphere 42.5
Hippocampus, CA2
nTPM: 47.6
1892 Male, age 76, both hemispheres 54.3
2249 Male, age 74, both hemispheres 53.1
2113 Female, age 91, right hemisphere 47.7
1963 Male, age 80, left hemisphere 47.2
2437 Female, age 94, left hemisphere 43.5
1940 Female, age 85, left hemisphere 40.0
Hippocampus, CA3
nTPM: 47.2
2436 Male, age 74, both hemispheres 56.0
1867 Male, age 76, both hemispheres 52.8
2137 Male, age 80, left hemisphere 51.2
1891 Female, age 85, both hemispheres 46.0
2861 Female, age 67, both hemispheres 40.4
2620 Female, age 94, left hemisphere 36.8
Parahippocampal cortex
nTPM: 45.1
1850 Male, age 80, both hemispheres 51.2
2245 Female, age 91, both hemispheres 49.5
1990 Female, age 91, right hemisphere 49.0
2692 Male, age 74, both hemispheres 48.1
1933 Female, age 85, both hemispheres 46.8
2532 Female, age 72, left hemisphere 45.2
2250 Female, age 67, right hemisphere 44.1
2622 Female, age 67, right hemisphere 43.3
2018 Male, age 76, both hemispheres 38.1
2693 Female, age 94, both hemispheres 36.1
Perirhinal gyrus
nTPM: 46.3
1847 Female, age 91, left hemisphere 52.9
1794 Male, age 80, right hemisphere 47.2
1841 Female, age 85, right hemisphere 46.5
2848 Male, age 76, right hemisphere 44.4
2521 Female, age 94, right hemisphere 40.8
Subiculum
nTPM: 49.2
1901 Male, age 80, both hemispheres 54.9
2042 Male, age 76, both hemispheres 52.3
2438 Female, age 94, left hemisphere 50.6
2619 Male, age 74, both hemispheres 46.4
2729 Female, age 91, right hemisphere 45.7
1977 Female, age 85, both hemispheres 45.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 40.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.2
Samples: 197

Max nTPM: 118.4
Min nTPM: 24.5
Std nTPM: 10.7
Median nTPM: 38.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 118.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 108.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 98.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 58.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 58.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 57.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 54.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 53.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 53.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 53.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 52.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 40.4
FF:10169-103B7 60 years, female 45.6
FF:10153-102I9 76 years, female 35.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 45.4
Pig sample Sample description nTPM
Subiculum
nTPM: 42.5
Samples: 4

Max nTPM: 50.8
Min nTPM: 35.8
Sample A Female 50.8
Sample B Female 43.0
Sample C Male 40.4
Sample D Male 35.8
Dorsal hippocampus
nTPM: 41.9
Samples: 4

Max nTPM: 52.9
Min nTPM: 30.6
Sample A Female 52.9
Sample B Female 41.7
Sample C Male 42.4
Sample D Male 30.6
Entorhinal cortex
nTPM: 32.4
Samples: 4

Max nTPM: 36.5
Min nTPM: 26.2
Sample A Female 36.5
Sample B Female 35.3
Sample C Male 31.6
Sample D Male 26.2
Ventral hippocampus
nTPM: 45.4
Samples: 4

Max nTPM: 58.6
Min nTPM: 35.2
Sample A Female 44.3
Sample B Female 35.2
Sample C Male 58.6
Sample D Male 43.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.1
Samples: 4

Max nTPM: 30.5
Min nTPM: 26.5
Sample A Male 27.5
Sample B Male 26.5
Sample C Female 27.7
Sample D Female 30.5
Hippocampal formation
nTPM: 27.0
Samples: 4

Max nTPM: 28.9
Min nTPM: 25.6
Sample A Male 25.6
Sample B Male 27.0
Sample C Female 28.9
Sample D Female 26.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
70918988 Antisense, RP_050712_04_H08, Mouse strain C57BL/6J (56 days, male) 0.5
633689 Antisense, RP_040907_02_B09, Mouse strain C57BL/6J (56 days, male) 0.1

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