MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:155.0 nTPM
HPA Brain:259.0 nTPM
GTEx:155.0 nTPM
FANTOM5:285.7 Scaled Tags Per Million
Pig:457.8 nTPM
Mouse:133.5 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 259.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.0
2019 Male, age 18, unknown 202.7
2411 Female, age 72, unknown 168.7
2666 Male, age 74, left hemisphere 164.6
2219 Male, age 76, both hemispheres 163.0
2828 Female, age 72, unknown 151.3
1830 Male, age 51, unknown 138.5
1833 Male, age 53, unknown 136.5
1870 Female, age 42, unknown 129.1
1827 Male, age 72, unknown 123.7
2586 Male, age 75, left hemisphere 102.0
Dorsal raphe nucleus
nTPM: 174.4
2047 Male, age 72, unknown 198.7
2750 Male, age 76, both hemispheres 198.6
2298 Female, age 72, unknown 186.7
1828 Male, age 53, unknown 165.1
2016 Female, age 72, unknown 122.8
Inferior colliculus
nTPM: 127.7
2097 Female, age 72, unknown 141.5
1890 Male, age 53, unknown 141.4
2849 Male, age 72, unknown 116.7
1848 Female, age 42, unknown 111.4
Median raphe nucleus
nTPM: 259.0
2220 Male, age 76, midline 259.0
Periaquaductal grey, anterior
nTPM: 138.0
1795 Male, age 51, unknown 150.7
1947 Male, age 18, unknown 134.5
2502 Female, age 75, unknown 128.9
Periaquaductal grey, dorsal
nTPM: 128.4
2850 Male, age 76, both hemispheres 165.9
2464 Female, age 72, unknown 119.9
1831 Male, age 72, unknown 116.0
1840 Male, age 53, unknown 111.6
Periaquaductal grey, lateral
nTPM: 145.4
2272 Male, age 74, both hemispheres 199.2
2140 Male, age 76, both hemispheres 141.4
2053 Male, age 18, unknown 95.6
Pretectal area
nTPM: 163.2
2007 Male, age 72, unknown 217.0
1817 Female, age 42, unknown 212.8
1944 Female, age 72, unknown 190.6
1815 Male, age 53, unknown 188.8
2273 Male, age 74, both hemispheres 174.2
1816 Male, age 51, unknown 163.8
2667 Female, age 75, unknown 162.3
2224 Female, age 72, unknown 144.0
2407 Male, age 75, both hemispheres 130.7
2825 Male, age 18, unknown 106.3
2316 Male, age 76, right hemisphere 105.0
Red nucleus
nTPM: 148.1
2785 Male, age 18, unknown 204.0
1865 Male, age 51, unknown 165.9
2725 Female, age 75, unknown 160.1
2823 Male, age 76, right hemisphere 157.9
1904 Male, age 53, unknown 152.8
2503 Female, age 72, unknown 148.6
1954 Female, age 42, unknown 146.4
2769 Male, age 72, unknown 135.7
2227 Male, age 72, unknown 133.5
1821 Female, age 72, unknown 130.4
2588 Male, age 74, left hemisphere 125.4
2584 Male, age 75, left hemisphere 116.8
Substantia nigra
nTPM: 217.4
1916 Female, age 42, unknown 355.1
1851 Male, age 51, unknown 259.2
2699 Male, age 18, unknown 249.1
1941 Male, age 53, unknown 240.6
2241 Male, age 72, unknown 214.3
1889 Female, age 72, unknown 207.3
2409 Female, age 72, unknown 184.9
2665 Male, age 74, both hemispheres 180.6
2590 Female, age 75, unknown 147.7
2583 Male, age 75, right hemisphere 135.0
Superior colliculus
nTPM: 141.3
2668 Female, age 75, unknown 189.0
2087 Female, age 72, unknown 166.1
2587 Male, age 74, left hemisphere 162.3
1913 Female, age 42, unknown 154.4
1995 Male, age 72, unknown 142.7
2261 Male, age 18, unknown 134.2
1796 Male, age 53, unknown 132.2
1839 Male, age 51, unknown 111.8
2664 Male, age 75, both hemispheres 111.6
1895 Male, age 76, right hemisphere 108.7
Ventral tegmental area
nTPM: 195.9
1915 Female, age 42, unknown 233.4
2218 Male, age 76, both hemispheres 232.5
2410 Female, age 72, unknown 217.3
2223 Female, age 72, unknown 171.0
2021 Male, age 53, unknown 161.5
1942 Male, age 51, unknown 159.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 155.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 155.0
Samples: 139

Max nTPM: 289.3
Min nTPM: 59.0
Std nTPM: 43.8
Median nTPM: 147.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 289.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 272.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 254.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 247.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 241.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 238.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 236.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 235.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 228.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 226.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 222.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 285.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 285.7
FF:10158-103A5 76 years, female 285.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 457.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 457.9
Samples: 4

Max nTPM: 626.5
Min nTPM: 319.6
Sample A Female 513.0
Sample B Female 319.6
Sample C Male 372.3
Sample D Male 626.5
Midbrain
nTPM: 418.5
Samples: 4

Max nTPM: 602.8
Min nTPM: 296.3
Sample A Female 602.8
Sample B Female 458.9
Sample C Male 315.9
Sample D Male 296.3
Periaqueductal gray
nTPM: 332.7
Samples: 3

Max nTPM: 356.2
Min nTPM: 309.2
Sample B Female 309.2
Sample C Male 332.8
Sample D Male 356.2
Superior colliculi
nTPM: 406.9
Samples: 4

Max nTPM: 531.6
Min nTPM: 213.7
Sample A Female 531.6
Sample B Female 213.7
Sample C Male 367.9
Sample D Male 514.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 133.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 133.5
Samples: 4

Max nTPM: 144.7
Min nTPM: 124.1
Sample A Male 144.7
Sample B Male 124.1
Sample C Female 126.8
Sample D Female 138.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69873708 Antisense, RP_050512_01_G10, Mouse strain C57BL/6J (56 days, male) 3.0

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