MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.8 nTPM
HPA Brain:16.7 nTPM
GTEx:18.8 nTPM
FANTOM5:19.7 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:2.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.1
2019 Male, age 18, unknown 16.3
2666 Male, age 74, left hemisphere 7.3
2586 Male, age 75, left hemisphere 7.0
1833 Male, age 53, unknown 6.9
2828 Female, age 72, unknown 6.5
2411 Female, age 72, unknown 5.5
1827 Male, age 72, unknown 4.6
1830 Male, age 51, unknown 3.8
1870 Female, age 42, unknown 2.1
2219 Male, age 76, both hemispheres 1.4
Dorsal raphe nucleus
nTPM: 8.5
2298 Female, age 72, unknown 16.3
2016 Female, age 72, unknown 12.9
1828 Male, age 53, unknown 7.0
2750 Male, age 76, both hemispheres 3.2
2047 Male, age 72, unknown 2.9
Inferior colliculus
nTPM: 3.3
1890 Male, age 53, unknown 4.8
2849 Male, age 72, unknown 3.7
1848 Female, age 42, unknown 3.0
2097 Female, age 72, unknown 1.8
Median raphe nucleus
nTPM: 3.6
2220 Male, age 76, midline 3.6
Periaquaductal grey, anterior
nTPM: 11.3
1795 Male, age 51, unknown 23.6
2502 Female, age 75, unknown 7.6
1947 Male, age 18, unknown 2.8
Periaquaductal grey, dorsal
nTPM: 9.1
2850 Male, age 76, both hemispheres 15.5
1831 Male, age 72, unknown 11.6
2464 Female, age 72, unknown 5.6
1840 Male, age 53, unknown 3.8
Periaquaductal grey, lateral
nTPM: 16.7
2272 Male, age 74, both hemispheres 35.6
2140 Male, age 76, both hemispheres 8.5
2053 Male, age 18, unknown 6.0
Pretectal area
nTPM: 9.6
1817 Female, age 42, unknown 19.4
2007 Male, age 72, unknown 17.0
2273 Male, age 74, both hemispheres 16.3
1816 Male, age 51, unknown 13.3
2224 Female, age 72, unknown 9.6
1815 Male, age 53, unknown 6.2
2667 Female, age 75, unknown 5.6
1944 Female, age 72, unknown 5.5
2825 Male, age 18, unknown 4.8
2407 Male, age 75, both hemispheres 4.1
2316 Male, age 76, right hemisphere 3.6
Red nucleus
nTPM: 6.8
2785 Male, age 18, unknown 16.3
1904 Male, age 53, unknown 9.3
2823 Male, age 76, right hemisphere 8.1
1821 Female, age 72, unknown 7.8
2725 Female, age 75, unknown 7.6
2584 Male, age 75, left hemisphere 5.9
2588 Male, age 74, left hemisphere 5.8
2503 Female, age 72, unknown 5.2
2227 Male, age 72, unknown 4.4
2769 Male, age 72, unknown 4.0
1865 Male, age 51, unknown 3.8
1954 Female, age 42, unknown 3.0
Substantia nigra
nTPM: 4.0
1889 Female, age 72, unknown 6.1
2665 Male, age 74, both hemispheres 5.5
2583 Male, age 75, right hemisphere 5.4
2590 Female, age 75, unknown 4.7
1851 Male, age 51, unknown 3.5
1941 Male, age 53, unknown 3.2
2409 Female, age 72, unknown 3.2
2699 Male, age 18, unknown 3.2
2241 Male, age 72, unknown 3.0
1916 Female, age 42, unknown 2.4
Superior colliculus
nTPM: 6.6
1995 Male, age 72, unknown 11.1
2261 Male, age 18, unknown 8.6
1913 Female, age 42, unknown 8.2
2587 Male, age 74, left hemisphere 7.5
2668 Female, age 75, unknown 6.8
1796 Male, age 53, unknown 6.6
2087 Female, age 72, unknown 6.5
1839 Male, age 51, unknown 3.9
2664 Male, age 75, both hemispheres 3.5
1895 Male, age 76, right hemisphere 3.3
Ventral tegmental area
nTPM: 4.5
2223 Female, age 72, unknown 5.7
2218 Male, age 76, both hemispheres 5.1
1915 Female, age 42, unknown 4.7
2021 Male, age 53, unknown 4.7
2410 Female, age 72, unknown 4.0
1942 Male, age 51, unknown 3.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.8
Samples: 139

Max nTPM: 139.0
Min nTPM: 1.6
Std nTPM: 20.6
Median nTPM: 10.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 139.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 81.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 76.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 75.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 72.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 67.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 63.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 57.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 56.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 53.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 52.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.7
FF:10158-103A5 76 years, female 19.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.9
Samples: 4

Max nTPM: 18.9
Min nTPM: 6.6
Sample A Female 17.3
Sample B Female 18.9
Sample C Male 6.6
Sample D Male 12.6
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.4
Sample A Female 9.3
Sample B Female 6.8
Sample C Male 9.4
Sample D Male 5.4
Periaqueductal gray
nTPM: 4.2
Samples: 3

Max nTPM: 5.0
Min nTPM: 3.7
Sample B Female 5.0
Sample C Male 3.7
Sample D Male 3.9
Superior colliculi
nTPM: 10.6
Samples: 4

Max nTPM: 13.9
Min nTPM: 9.2
Sample A Female 13.9
Sample B Female 9.6
Sample C Male 9.2
Sample D Male 9.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.9
Sample A Male 2.8
Sample B Male 1.9
Sample C Female 3.3
Sample D Female 2.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
1192 Antisense, RP_Baylor_102859, Mouse strain C57BL/6J (56 days, male) 0.1
1191 Antisense, RP_Baylor_102859, Mouse strain C57BL/6J (56 days, male) 0.0
80343407 Antisense, RP_071204_04_F11, Mouse strain C57BL/6J (56 days, male) 0.0

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