MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.5 nTPM
HPA Brain:175.5 nTPM
GTEx:73.5 nTPM
FANTOM5:265.9 Scaled Tags Per Million
Pig:151.3 nTPM
Mouse:284.3 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 175.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 167.1
2411 Female, age 72, unknown 220.9
1870 Female, age 42, unknown 210.6
1827 Male, age 72, unknown 186.0
2219 Male, age 76, both hemispheres 176.4
1833 Male, age 53, unknown 170.5
1830 Male, age 51, unknown 166.9
2666 Male, age 74, left hemisphere 140.5
2828 Female, age 72, unknown 139.1
2019 Male, age 18, unknown 134.3
2586 Male, age 75, left hemisphere 125.5
Dorsal raphe nucleus
nTPM: 169.4
2298 Female, age 72, unknown 192.5
2750 Male, age 76, both hemispheres 189.3
2047 Male, age 72, unknown 161.3
1828 Male, age 53, unknown 157.0
2016 Female, age 72, unknown 147.2
Inferior colliculus
nTPM: 175.5
2097 Female, age 72, unknown 207.0
1848 Female, age 42, unknown 183.5
2849 Male, age 72, unknown 175.1
1890 Male, age 53, unknown 136.2
Median raphe nucleus
nTPM: 175.3
2220 Male, age 76, midline 175.3
Periaquaductal grey, anterior
nTPM: 165.1
1947 Male, age 18, unknown 181.9
2502 Female, age 75, unknown 167.2
1795 Male, age 51, unknown 146.3
Periaquaductal grey, dorsal
nTPM: 161.4
1840 Male, age 53, unknown 197.5
2464 Female, age 72, unknown 169.2
1831 Male, age 72, unknown 148.6
2850 Male, age 76, both hemispheres 130.2
Periaquaductal grey, lateral
nTPM: 147.6
2053 Male, age 18, unknown 181.1
2272 Male, age 74, both hemispheres 139.4
2140 Male, age 76, both hemispheres 122.5
Pretectal area
nTPM: 170.1
2224 Female, age 72, unknown 198.1
2825 Male, age 18, unknown 196.4
1816 Male, age 51, unknown 186.0
2007 Male, age 72, unknown 184.4
1815 Male, age 53, unknown 173.2
1944 Female, age 72, unknown 170.8
1817 Female, age 42, unknown 161.4
2316 Male, age 76, right hemisphere 159.3
2273 Male, age 74, both hemispheres 149.2
2407 Male, age 75, both hemispheres 147.0
2667 Female, age 75, unknown 145.3
Red nucleus
nTPM: 157.9
1821 Female, age 72, unknown 194.2
1954 Female, age 42, unknown 177.6
2725 Female, age 75, unknown 171.5
2503 Female, age 72, unknown 170.4
1865 Male, age 51, unknown 167.7
1904 Male, age 53, unknown 154.9
2588 Male, age 74, left hemisphere 150.3
2769 Male, age 72, unknown 150.0
2227 Male, age 72, unknown 148.0
2823 Male, age 76, right hemisphere 138.8
2785 Male, age 18, unknown 138.2
2584 Male, age 75, left hemisphere 132.6
Substantia nigra
nTPM: 163.8
2241 Male, age 72, unknown 196.2
2409 Female, age 72, unknown 187.2
1889 Female, age 72, unknown 184.4
1941 Male, age 53, unknown 171.0
2583 Male, age 75, right hemisphere 164.8
1851 Male, age 51, unknown 162.8
1916 Female, age 42, unknown 154.2
2590 Female, age 75, unknown 152.1
2699 Male, age 18, unknown 135.7
2665 Male, age 74, both hemispheres 129.8
Superior colliculus
nTPM: 171.8
1895 Male, age 76, right hemisphere 199.3
2668 Female, age 75, unknown 190.3
2587 Male, age 74, left hemisphere 188.2
1839 Male, age 51, unknown 180.7
1913 Female, age 42, unknown 178.7
2261 Male, age 18, unknown 177.3
1796 Male, age 53, unknown 172.9
2087 Female, age 72, unknown 169.0
1995 Male, age 72, unknown 140.5
2664 Male, age 75, both hemispheres 120.7
Ventral tegmental area
nTPM: 169.7
2410 Female, age 72, unknown 199.0
2223 Female, age 72, unknown 189.6
2021 Male, age 53, unknown 165.8
1915 Female, age 42, unknown 161.5
2218 Male, age 76, both hemispheres 153.0
1942 Male, age 51, unknown 149.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.5
Samples: 139

Max nTPM: 149.3
Min nTPM: 28.2
Std nTPM: 23.2
Median nTPM: 68.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 149.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 141.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 140.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 130.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 127.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 127.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 126.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 121.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 116.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 113.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 112.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 265.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 265.9
FF:10158-103A5 76 years, female 265.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 151.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 122.3
Samples: 4

Max nTPM: 158.9
Min nTPM: 89.5
Sample A Female 158.9
Sample B Female 101.8
Sample C Male 138.9
Sample D Male 89.5
Midbrain
nTPM: 151.3
Samples: 4

Max nTPM: 178.5
Min nTPM: 123.6
Sample A Female 123.6
Sample B Female 152.7
Sample C Male 150.5
Sample D Male 178.5
Periaqueductal gray
nTPM: 129.5
Samples: 3

Max nTPM: 140.2
Min nTPM: 121.3
Sample B Female 121.3
Sample C Male 140.2
Sample D Male 127.0
Superior colliculi
nTPM: 123.2
Samples: 4

Max nTPM: 148.1
Min nTPM: 73.9
Sample A Female 148.1
Sample B Female 73.9
Sample C Male 129.8
Sample D Male 140.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 284.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 284.4
Samples: 4

Max nTPM: 303.9
Min nTPM: 267.6
Sample A Male 267.6
Sample B Male 282.2
Sample C Female 303.9
Sample D Female 283.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
75043158 Antisense, RP_060412_05_B09, Mouse strain C57BL/6J (56 days, male) 6.7
73424011 Antisense, RP_051019_03_C04, Mouse strain C57BL/6J (56 days, male) 4.7

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