MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:961.6 nTPM
HPA Brain:381.8 nTPM
GTEx:961.6 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:360.5 nTPM
Mouse:377.5 nTPM
Allen mouse:11.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 381.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 349.3
2666 Male, age 74, left hemisphere 412.9
2411 Female, age 72, unknown 394.1
1870 Female, age 42, unknown 375.5
1830 Male, age 51, unknown 351.3
2828 Female, age 72, unknown 349.3
1827 Male, age 72, unknown 342.9
2586 Male, age 75, left hemisphere 339.9
2019 Male, age 18, unknown 330.4
1833 Male, age 53, unknown 325.4
2219 Male, age 76, both hemispheres 271.3
Dorsal raphe nucleus
nTPM: 348.1
2298 Female, age 72, unknown 387.0
2016 Female, age 72, unknown 371.3
2750 Male, age 76, both hemispheres 367.6
1828 Male, age 53, unknown 326.3
2047 Male, age 72, unknown 288.4
Inferior colliculus
nTPM: 328.2
1890 Male, age 53, unknown 341.9
2097 Female, age 72, unknown 341.1
2849 Male, age 72, unknown 319.3
1848 Female, age 42, unknown 310.6
Median raphe nucleus
nTPM: 319.2
2220 Male, age 76, midline 319.2
Periaquaductal grey, anterior
nTPM: 349.9
2502 Female, age 75, unknown 424.8
1947 Male, age 18, unknown 321.8
1795 Male, age 51, unknown 303.0
Periaquaductal grey, dorsal
nTPM: 336.8
1840 Male, age 53, unknown 372.1
2464 Female, age 72, unknown 349.9
1831 Male, age 72, unknown 341.0
2850 Male, age 76, both hemispheres 284.2
Periaquaductal grey, lateral
nTPM: 310.3
2053 Male, age 18, unknown 347.6
2272 Male, age 74, both hemispheres 303.9
2140 Male, age 76, both hemispheres 279.5
Pretectal area
nTPM: 319.1
2224 Female, age 72, unknown 359.6
2316 Male, age 76, right hemisphere 349.5
2825 Male, age 18, unknown 345.2
1815 Male, age 53, unknown 343.4
1817 Female, age 42, unknown 324.5
2007 Male, age 72, unknown 317.8
2273 Male, age 74, both hemispheres 307.5
1816 Male, age 51, unknown 304.9
1944 Female, age 72, unknown 290.5
2407 Male, age 75, both hemispheres 289.9
2667 Female, age 75, unknown 277.8
Red nucleus
nTPM: 364.5
2503 Female, age 72, unknown 445.5
1821 Female, age 72, unknown 410.2
1865 Male, age 51, unknown 389.8
1904 Male, age 53, unknown 377.3
2588 Male, age 74, left hemisphere 363.9
2584 Male, age 75, left hemisphere 362.5
2725 Female, age 75, unknown 359.7
2227 Male, age 72, unknown 353.4
2769 Male, age 72, unknown 349.1
1954 Female, age 42, unknown 328.4
2785 Male, age 18, unknown 319.4
2823 Male, age 76, right hemisphere 314.5
Substantia nigra
nTPM: 381.8
2665 Male, age 74, both hemispheres 443.5
2699 Male, age 18, unknown 441.5
1851 Male, age 51, unknown 436.1
2241 Male, age 72, unknown 416.0
2409 Female, age 72, unknown 390.5
1916 Female, age 42, unknown 378.9
2590 Female, age 75, unknown 367.2
1889 Female, age 72, unknown 327.4
1941 Male, age 53, unknown 325.3
2583 Male, age 75, right hemisphere 291.9
Superior colliculus
nTPM: 356.1
2587 Male, age 74, left hemisphere 433.4
1995 Male, age 72, unknown 421.1
1913 Female, age 42, unknown 390.8
1839 Male, age 51, unknown 360.4
1796 Male, age 53, unknown 342.8
2668 Female, age 75, unknown 342.5
2664 Male, age 75, both hemispheres 333.1
1895 Male, age 76, right hemisphere 324.7
2261 Male, age 18, unknown 318.5
2087 Female, age 72, unknown 293.2
Ventral tegmental area
nTPM: 371.5
1915 Female, age 42, unknown 411.3
2223 Female, age 72, unknown 399.2
2021 Male, age 53, unknown 386.4
2410 Female, age 72, unknown 375.0
1942 Male, age 51, unknown 344.7
2218 Male, age 76, both hemispheres 312.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 961.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 961.6
Samples: 139

Max nTPM: 3103.8
Min nTPM: 374.6
Std nTPM: 377.0
Median nTPM: 879.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3103.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2249.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1986.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1842.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1703.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1602.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1585.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1579.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1541.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1510.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1491.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.1
FF:10158-103A5 76 years, female 12.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 360.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 353.4
Samples: 4

Max nTPM: 452.7
Min nTPM: 293.5
Sample A Female 452.7
Sample B Female 372.6
Sample C Male 293.5
Sample D Male 294.9
Midbrain
nTPM: 330.4
Samples: 4

Max nTPM: 478.7
Min nTPM: 209.5
Sample A Female 478.7
Sample B Female 369.3
Sample C Male 264.0
Sample D Male 209.5
Periaqueductal gray
nTPM: 265.4
Samples: 3

Max nTPM: 282.5
Min nTPM: 245.0
Sample B Female 282.5
Sample C Male 268.7
Sample D Male 245.0
Superior colliculi
nTPM: 360.5
Samples: 4

Max nTPM: 408.2
Min nTPM: 290.5
Sample A Female 404.6
Sample B Female 408.2
Sample C Male 338.6
Sample D Male 290.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 377.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 377.5
Samples: 4

Max nTPM: 405.6
Min nTPM: 359.0
Sample A Male 405.6
Sample B Male 361.7
Sample C Female 359.0
Sample D Female 383.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.2
69549280 Antisense, RP_050126_02_C10, Mouse strain C57BL/6J (56 days, male) 11.2

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