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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
89.1
nTPM
FANTOM5:
59.4
Scaled Tags Per Million
Pig:
18.0
nTPM
PONS - HPA Brain RNA-seq
Max nTPM
89.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 60.6
2090
Male, age 80, both hemispheres
67.7
2301
Female, age 85, both hemispheres
67.7
2188
Female, age 91, both hemispheres
60.0
1984
Male, age 76, both hemispheres
46.9
Dorsal cochlear nucleus nTPM: 66.2
2802
Male, age 74, right hemisphere
73.1
2370
Male, age 61, both hemispheres
71.1
2187
Female, age 91, both hemispheres
65.8
2058
Male, age 76, both hemispheres
63.0
2378
Male, age 80, both hemispheres
58.3
Dorsal tegmental nucleus nTPM: 76.8
2358
Male, age 61, both hemispheres
85.9
2083
Male, age 80, both hemispheres
84.0
2326
Male, age 74, both hemispheres
73.4
1936
Male, age 76, left hemisphere
63.9
Dorsolateral tegmental area nTPM: 75.8
2751
Female, age 85, both hemispheres
81.0
2141
Male, age 76, both hemispheres
80.7
2360
Male, age 74, both hemispheres
79.3
2654
Male, age 80, both hemispheres
75.8
2337
Male, age 61, both hemispheres
61.9
Kolliker-Fuse nucleus nTPM: 62.2
2793
Female, age 91, left hemisphere
66.9
2163
Male, age 80, both hemispheres
66.0
2315
Male, age 76, right hemisphere
53.6
Lateral lemniscal nuclei nTPM: 65.4
2169
Male, age 76, both hemispheres
74.2
2746
Female, age 85, left hemisphere
68.0
2453
Male, age 74, right hemisphere
64.6
2320
Female, age 91, left hemisphere
64.2
2036
Male, age 80, both hemispheres
56.1
Lateral parabrachial nucleus nTPM: 68.9
2139
Female, age 85, right hemisphere
75.3
2013
Male, age 80, both hemispheres
71.8
2790
Male, age 61, both hemispheres
66.7
2792
Male, age 76, both hemispheres
61.7
Lateral vestibular nucleus nTPM: 71.8
2311
Male, age 80, both hemispheres
76.5
2184
Male, age 76, both hemispheres
67.1
Locus coeruleus nTPM: 89.1
2317
Female, age 72, unknown
103.4
2014
Male, age 55, unknown
96.5
1980
Male, age 76, both hemispheres
91.9
2788
Male, age 74, unknown
87.1
2123
Female, age 91, both hemispheres
84.3
2162
Male, age 80, both hemispheres
83.7
2720
Male, age 74, both hemispheres
77.1
Medial parabrachial nucleus nTPM: 71.4
2156
Male, age 61, both hemispheres
75.8
2170
Female, age 91, both hemispheres
74.1
2463
Female, age 85, right hemisphere
73.2
2786
Male, age 76, both hemispheres
72.4
2854
Male, age 80, both hemispheres
61.3
Medial periolivary nuclei nTPM: 67.2
2063
Male, age 76, both hemispheres
78.1
2171
Female, age 85, both hemispheres
71.4
2791
Male, age 74, right hemisphere
63.4
2081
Male, age 80, both hemispheres
62.2
2458
Female, age 91, both hemispheres
61.1
Motor facial nucleus nTPM: 66.1
2062
Male, age 76, both hemispheres
75.2
2126
Male, age 61, both hemispheres
71.3
2795
Female, age 91, both hemispheres
70.4
2365
Male, age 74, right hemisphere
67.5
2697
Female, age 85, both hemispheres
57.4
2327
Male, age 80, both hemispheres
54.9
Motor trigeminal nucleus nTPM: 68.3
2309
Male, age 76, both hemispheres
75.3
2335
Male, age 61, both hemispheres
75.0
2321
Female, age 91, both hemispheres
66.1
2560
Male, age 74, both hemispheres
65.6
2079
Male, age 80, both hemispheres
59.4
Nuclei of the trapezoid body nTPM: 68.9
2735
Female, age 85, both hemispheres
74.3
2159
Male, age 61, both hemispheres
71.2
1983
Male, age 76, both hemispheres
67.9
2368
Female, age 91, both hemispheres
67.5
2166
Male, age 80, both hemispheres
63.6
Nucleus raphe magnus nTPM: 66.2
2455
Male, age 74, both hemispheres
71.3
2051
Male, age 76, both hemispheres
69.5
2172
Female, age 85, both hemispheres
69.5
2160
Male, age 61, both hemispheres
63.2
2459
Female, age 91, both hemispheres
62.6
2328
Male, age 80, both hemispheres
61.3
Paramedian reticular nucleus nTPM: 74.6
2057
Male, age 80, both hemispheres
85.3
2050
Female, age 85, both hemispheres
80.7
2313
Male, age 61, both hemispheres
77.6
2052
Male, age 76, both hemispheres
54.8
Pedunculopontine tegmental nucleus nTPM: 74.9
1921
Female, age 85, both hemispheres
84.8
2334
Male, age 80, both hemispheres
76.4
2338
Male, age 61, both hemispheres
63.4
Pontine nuclei nTPM: 68.8
2787
Female, age 85, both hemispheres
78.7
1863
Male, age 55, unknown
77.0
2109
Female, age 72, unknown
76.7
1968
Male, age 76, left hemisphere
68.1
2454
Male, age 74, left hemisphere
67.7
2115
Male, age 80, left hemisphere
63.4
2319
Female, age 91, both hemispheres
62.8
2727
Male, age 61, right hemisphere
55.9
Pontine raphe nucleus nTPM: 81.4
2853
Male, age 76, midline
83.7
2122
Female, age 85, midline
79.1
Posteroventral cochlear nucleus nTPM: 65.3
2070
Male, age 76, both hemispheres
74.9
2752
Female, age 85, both hemispheres
72.3
2371
Male, age 61, both hemispheres
61.7
2135
Female, age 91, both hemispheres
59.6
2341
Male, age 80, both hemispheres
57.9
Principal sensory trigeminal nucleus nTPM: 59.1
2158
Male, age 61, both hemispheres
67.1
2367
Female, age 91, left hemisphere
62.0
2324
Male, age 76, both hemispheres
54.7
2008
Male, age 80, left hemisphere
52.6
Reticular pontine nucleus, caudal nTPM: 65.0
2092
Male, age 76, both hemispheres
71.4
2559
Male, age 74, both hemispheres
67.3
2457
Female, age 91, both hemispheres
64.4
2332
Male, age 80, right hemisphere
56.9
Reticular pontine nucleus, oral nTPM: 76.8
1939
Male, age 80, both hemispheres
83.4
2012
Female, age 85, both hemispheres
81.1
2167
Male, age 76, both hemispheres
78.2
2361
Male, age 74, both hemispheres
74.2
2366
Female, age 91, both hemispheres
66.8
Reticulotegmental nucleus nTPM: 72.2
2452
Male, age 74, both hemispheres
73.8
2325
Male, age 76, both hemispheres
72.7
2333
Male, age 80, both hemispheres
72.6
2322
Female, age 91, both hemispheres
69.8
Spinal trigeminal nucleus, oral nTPM: 64.8
1978
Male, age 76, both hemispheres
73.3
2164
Male, age 80, both hemispheres
60.6
2737
Female, age 85, both hemispheres
60.6
Subcoeruleus area nTPM: 72.3
2369
Female, age 85, left hemisphere
80.8
2089
Male, age 76, left hemisphere
72.7
2451
Male, age 74, both hemispheres
72.0
2323
Female, age 91, left hemisphere
70.6
1958
Male, age 80, both hemispheres
65.4
Superior olive nTPM: 67.1
2364
Male, age 74, right hemisphere
71.0
1875
Female, age 85, both hemispheres
70.6
2020
Male, age 76, both hemispheres
70.0
2329
Male, age 80, right hemisphere
62.0
2561
Female, age 91, both hemispheres
61.7
Ventral periolivary nuclei nTPM: 66.7
2130
Female, age 85, both hemispheres
75.7
2023
Male, age 76, both hemispheres
72.3
2165
Male, age 80, both hemispheres
65.0
2794
Female, age 91, left hemisphere
53.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 65.4
2359
Male, age 61, both hemispheres
71.4
2449
Male, age 74, both hemispheres
68.5
1959
Male, age 76, both hemispheres
67.4
2161
Male, age 80, both hemispheres
62.5
2456
Female, age 91, both hemispheres
61.9
2840
Female, age 85, both hemispheres
60.6
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
