MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:340.7 nTPM
HPA Brain:549.2 nTPM
GTEx:340.7 nTPM
FANTOM5:702.8 Scaled Tags Per Million
Pig:769.5 nTPM
Mouse:1419.2 nTPM
Allen mouse:22.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 549.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 438.6
2019 Male, age 18, unknown 637.0
2411 Female, age 72, unknown 612.7
1827 Male, age 72, unknown 489.4
2219 Male, age 76, both hemispheres 445.5
1870 Female, age 42, unknown 405.5
1833 Male, age 53, unknown 404.3
2666 Male, age 74, left hemisphere 385.2
1830 Male, age 51, unknown 382.9
2828 Female, age 72, unknown 372.7
2586 Male, age 75, left hemisphere 250.4
Dorsal raphe nucleus
nTPM: 402.0
1828 Male, age 53, unknown 475.1
2750 Male, age 76, both hemispheres 444.0
2298 Female, age 72, unknown 440.8
2047 Male, age 72, unknown 371.0
2016 Female, age 72, unknown 279.0
Inferior colliculus
nTPM: 440.1
2097 Female, age 72, unknown 548.4
1848 Female, age 42, unknown 466.2
1890 Male, age 53, unknown 439.5
2849 Male, age 72, unknown 306.5
Median raphe nucleus
nTPM: 427.5
2220 Male, age 76, midline 427.5
Periaquaductal grey, anterior
nTPM: 400.1
1947 Male, age 18, unknown 460.3
1795 Male, age 51, unknown 375.5
2502 Female, age 75, unknown 364.4
Periaquaductal grey, dorsal
nTPM: 285.1
1831 Male, age 72, unknown 348.9
2464 Female, age 72, unknown 323.0
1840 Male, age 53, unknown 237.3
2850 Male, age 76, both hemispheres 231.3
Periaquaductal grey, lateral
nTPM: 333.1
2272 Male, age 74, both hemispheres 475.2
2053 Male, age 18, unknown 322.6
2140 Male, age 76, both hemispheres 201.5
Pretectal area
nTPM: 504.4
2007 Male, age 72, unknown 731.8
1817 Female, age 42, unknown 720.1
1944 Female, age 72, unknown 686.3
1816 Male, age 51, unknown 679.6
1815 Male, age 53, unknown 571.8
2273 Male, age 74, both hemispheres 456.0
2667 Female, age 75, unknown 380.6
2224 Female, age 72, unknown 349.2
2407 Male, age 75, both hemispheres 346.8
2825 Male, age 18, unknown 316.6
2316 Male, age 76, right hemisphere 309.9
Red nucleus
nTPM: 544.7
1821 Female, age 72, unknown 843.1
1865 Male, age 51, unknown 587.5
1954 Female, age 42, unknown 581.4
2725 Female, age 75, unknown 544.5
2785 Male, age 18, unknown 544.0
2823 Male, age 76, right hemisphere 514.2
1904 Male, age 53, unknown 506.7
2769 Male, age 72, unknown 495.7
2227 Male, age 72, unknown 494.6
2503 Female, age 72, unknown 484.0
2588 Male, age 74, left hemisphere 472.5
2584 Male, age 75, left hemisphere 467.7
Substantia nigra
nTPM: 549.2
1941 Male, age 53, unknown 785.5
1889 Female, age 72, unknown 727.5
1916 Female, age 42, unknown 713.9
1851 Male, age 51, unknown 559.2
2241 Male, age 72, unknown 553.7
2409 Female, age 72, unknown 542.3
2590 Female, age 75, unknown 458.8
2583 Male, age 75, right hemisphere 417.7
2699 Male, age 18, unknown 394.5
2665 Male, age 74, both hemispheres 338.3
Superior colliculus
nTPM: 444.0
2668 Female, age 75, unknown 661.4
2087 Female, age 72, unknown 591.8
1895 Male, age 76, right hemisphere 550.2
2587 Male, age 74, left hemisphere 487.9
2261 Male, age 18, unknown 475.4
1796 Male, age 53, unknown 386.9
1913 Female, age 42, unknown 375.7
1839 Male, age 51, unknown 373.3
1995 Male, age 72, unknown 325.7
2664 Male, age 75, both hemispheres 211.5
Ventral tegmental area
nTPM: 461.8
2410 Female, age 72, unknown 681.6
2218 Male, age 76, both hemispheres 552.6
1915 Female, age 42, unknown 491.3
2223 Female, age 72, unknown 390.5
1942 Male, age 51, unknown 360.9
2021 Male, age 53, unknown 294.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 340.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 340.7
Samples: 139

Max nTPM: 1875.1
Min nTPM: 38.1
Std nTPM: 271.0
Median nTPM: 275.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1875.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1447.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1153.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1012.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 995.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 865.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 797.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 720.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 700.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 695.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 677.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 702.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 702.8
FF:10158-103A5 76 years, female 702.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 769.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 421.2
Samples: 4

Max nTPM: 641.5
Min nTPM: 200.9
Sample A Female 641.5
Sample B Female 291.5
Sample C Male 550.7
Sample D Male 200.9
Midbrain
nTPM: 570.0
Samples: 4

Max nTPM: 916.6
Min nTPM: 229.8
Sample A Female 229.8
Sample B Female 336.2
Sample C Male 797.2
Sample D Male 916.6
Periaqueductal gray
nTPM: 330.3
Samples: 3

Max nTPM: 388.9
Min nTPM: 271.6
Sample B Female 330.3
Sample C Male 388.9
Sample D Male 271.6
Superior colliculi
nTPM: 769.5
Samples: 4

Max nTPM: 1018.7
Min nTPM: 424.1
Sample A Female 978.8
Sample B Female 424.1
Sample C Male 1018.7
Sample D Male 656.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1419.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 1419.2
Samples: 4

Max nTPM: 1489.1
Min nTPM: 1318.5
Sample A Male 1318.5
Sample B Male 1461.3
Sample C Female 1489.1
Sample D Female 1408.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.7
68546368 Antisense, RP_050120_02_D04, Mouse strain C57BL/6J (56 days, male) 25.4
70919203 Antisense, RP_050712_04_D08, Mouse strain C57BL/6J (56 days, male) 20.1

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