MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.8 nTPM
HPA Brain:43.3 nTPM
GTEx:40.8 nTPM
FANTOM5:71.6 Scaled Tags Per Million
Pig:62.6 nTPM
Mouse:28.9 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.8
2019 Male, age 18, unknown 51.9
2411 Female, age 72, unknown 36.5
1833 Male, age 53, unknown 36.1
1870 Female, age 42, unknown 35.7
1830 Male, age 51, unknown 34.8
2828 Female, age 72, unknown 32.4
1827 Male, age 72, unknown 30.2
2586 Male, age 75, left hemisphere 26.8
2219 Male, age 76, both hemispheres 22.6
2666 Male, age 74, left hemisphere 20.8
Dorsal raphe nucleus
nTPM: 34.8
2298 Female, age 72, unknown 41.2
2750 Male, age 76, both hemispheres 37.6
2016 Female, age 72, unknown 35.1
1828 Male, age 53, unknown 30.6
2047 Male, age 72, unknown 29.5
Inferior colliculus
nTPM: 31.7
2097 Female, age 72, unknown 37.7
1890 Male, age 53, unknown 33.1
1848 Female, age 42, unknown 29.8
2849 Male, age 72, unknown 26.1
Median raphe nucleus
nTPM: 34.6
2220 Male, age 76, midline 34.6
Periaquaductal grey, anterior
nTPM: 33.1
2502 Female, age 75, unknown 38.1
1795 Male, age 51, unknown 34.4
1947 Male, age 18, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 32.3
1831 Male, age 72, unknown 34.7
2850 Male, age 76, both hemispheres 32.1
2464 Female, age 72, unknown 31.7
1840 Male, age 53, unknown 30.8
Periaquaductal grey, lateral
nTPM: 39.9
2272 Male, age 74, both hemispheres 52.5
2140 Male, age 76, both hemispheres 33.6
2053 Male, age 18, unknown 33.5
Pretectal area
nTPM: 43.3
1944 Female, age 72, unknown 54.9
2007 Male, age 72, unknown 54.7
1817 Female, age 42, unknown 49.2
2273 Male, age 74, both hemispheres 48.8
1815 Male, age 53, unknown 46.5
1816 Male, age 51, unknown 46.3
2316 Male, age 76, right hemisphere 41.3
2224 Female, age 72, unknown 38.5
2407 Male, age 75, both hemispheres 37.2
2667 Female, age 75, unknown 34.7
2825 Male, age 18, unknown 24.7
Red nucleus
nTPM: 37.9
2785 Male, age 18, unknown 58.8
1904 Male, age 53, unknown 44.9
1865 Male, age 51, unknown 40.6
2503 Female, age 72, unknown 40.4
2823 Male, age 76, right hemisphere 38.4
1954 Female, age 42, unknown 37.1
2725 Female, age 75, unknown 35.9
2227 Male, age 72, unknown 35.7
1821 Female, age 72, unknown 35.4
2769 Male, age 72, unknown 34.8
2584 Male, age 75, left hemisphere 30.4
2588 Male, age 74, left hemisphere 22.6
Substantia nigra
nTPM: 35.9
2590 Female, age 75, unknown 43.1
2409 Female, age 72, unknown 42.3
1889 Female, age 72, unknown 39.7
2665 Male, age 74, both hemispheres 38.5
2583 Male, age 75, right hemisphere 37.5
2241 Male, age 72, unknown 36.1
1851 Male, age 51, unknown 35.1
1916 Female, age 42, unknown 30.1
1941 Male, age 53, unknown 29.1
2699 Male, age 18, unknown 27.3
Superior colliculus
nTPM: 38.3
1913 Female, age 42, unknown 49.8
2261 Male, age 18, unknown 45.8
2087 Female, age 72, unknown 45.0
1995 Male, age 72, unknown 43.6
2587 Male, age 74, left hemisphere 41.5
1796 Male, age 53, unknown 34.8
2668 Female, age 75, unknown 33.6
2664 Male, age 75, both hemispheres 31.3
1839 Male, age 51, unknown 29.5
1895 Male, age 76, right hemisphere 28.3
Ventral tegmental area
nTPM: 35.1
2218 Male, age 76, both hemispheres 39.4
2410 Female, age 72, unknown 37.8
2223 Female, age 72, unknown 35.2
2021 Male, age 53, unknown 34.3
1942 Male, age 51, unknown 32.7
1915 Female, age 42, unknown 31.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.8
Samples: 139

Max nTPM: 89.5
Min nTPM: 16.9
Std nTPM: 12.2
Median nTPM: 38.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 89.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 75.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 75.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 68.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 66.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 65.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 63.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 63.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 62.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 61.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 61.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.6
FF:10158-103A5 76 years, female 71.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.1
Samples: 4

Max nTPM: 80.4
Min nTPM: 38.2
Sample A Female 61.1
Sample B Female 80.4
Sample C Male 38.2
Sample D Male 60.7
Midbrain
nTPM: 58.4
Samples: 4

Max nTPM: 85.7
Min nTPM: 39.7
Sample A Female 85.7
Sample B Female 64.9
Sample C Male 39.7
Sample D Male 43.4
Periaqueductal gray
nTPM: 56.4
Samples: 3

Max nTPM: 60.8
Min nTPM: 47.6
Sample B Female 60.8
Sample C Male 47.6
Sample D Male 60.8
Superior colliculi
nTPM: 62.6
Samples: 4

Max nTPM: 94.6
Min nTPM: 42.9
Sample A Female 60.5
Sample B Female 94.6
Sample C Male 42.9
Sample D Male 52.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 31.9
Min nTPM: 24.4
Sample A Male 31.9
Sample B Male 31.2
Sample C Female 24.4
Sample D Female 28.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
276066 Antisense, RP_040609_01_B10, Mouse strain C57BL/6J (56 days, male) 1.0
70237998 Antisense, RP_050526_03_B11, Mouse strain C57BL/6J (56 days, male) 1.0
199143 Antisense, RP_040609_01_B10, Mouse strain C57BL/6J (56 days, male) 0.6
73931627 Antisense, RP_051214_04_A07, Mouse strain C57BL/6J (56 days, male) 0.3

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