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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
99.1
nTPM
Monaco:
20.4
nTPM
Schmiedel:
378.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
99.1
HPA sample
nTPM
gdT-cell nTPM: 58.7
Samples: 6
Max nTPM: 76.8
Min nTPM: 50.0
P10809_1007
50.0
P10809_1022
57.5
P10809_1041
76.8
P10809_1060
50.2
P10809_1077
56.5
P10809_1098
61.1
MAIT T-cell nTPM: 67.0
Samples: 6
Max nTPM: 86.2
Min nTPM: 44.8
P10809_1006
44.8
P10809_1024
70.1
P10809_1043
86.2
P10809_1062
63.5
P10809_1083
72.4
P10809_1097
65.0
Memory CD4 T-cell nTPM: 72.7
Samples: 6
Max nTPM: 82.5
Min nTPM: 50.5
P10809_1014
50.5
P10809_1026
82.5
P10809_1045
78.6
P10809_1064
75.5
P10809_1086
70.4
P10809_1113
78.7
Memory CD8 T-cell nTPM: 72.1
Samples: 5
Max nTPM: 92.9
Min nTPM: 51.9
P10809_1012
51.9
P10809_1027
92.9
P10809_1046
79.0
P10809_1065
61.9
P10809_1111
74.9
Naive CD4 T-cell nTPM: 74.9
Samples: 6
Max nTPM: 130.1
Min nTPM: 44.7
P10809_1015
44.7
P10809_1030
90.8
P10809_1049
130.1
P10809_1068
67.0
P10809_1085
55.5
P10809_1112
61.5
Naive CD8 T-cell nTPM: 72.3
Samples: 6
Max nTPM: 94.1
Min nTPM: 48.6
P10809_1016
48.6
P10809_1031
81.7
P10809_1050
94.1
P10809_1069
79.7
P10809_1087
60.8
P10809_1110
69.0
T-reg nTPM: 99.1
Samples: 6
Max nTPM: 157.3
Min nTPM: 63.1
P10809_1018
63.1
P10809_1037
91.2
P10809_1056
157.3
P10809_1075
85.2
P10809_1094
102.4
P10809_1106
95.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
20.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 15.8
Samples: 4
Max nTPM: 19.0
Min nTPM: 11.2
RHH5202_R3573
17.5
RHH5230_R3602
11.2
RHH5259_R3631
15.3
RHH5288_R3660
19.0
Effector memory CD8 T-cell nTPM: 11.6
Samples: 4
Max nTPM: 16.4
Min nTPM: 8.3
RHH5203_R3574
9.2
RHH5231_R3603
16.4
RHH5260_R3632
12.6
RHH5289_R3661
8.3
MAIT T-cell nTPM: 12.0
Samples: 4
Max nTPM: 17.7
Min nTPM: 8.7
RHH5233_R3605
17.7
RHH5205_R3576
10.3
RHH5262_R3634
11.2
RHH5297_R3663
8.7
Memory CD4 T-cell TFH nTPM: 15.9
Samples: 4
Max nTPM: 20.7
Min nTPM: 7.5
RHH5300_R3666
7.5
RHH5236_R3608
18.2
RHH5265_R3637
17.3
RHH5208_R3579
20.7
Memory CD4 T-cell Th1 nTPM: 12.8
Samples: 4
Max nTPM: 21.0
Min nTPM: 3.6
RHH5210_R3581
3.6
RHH5302_R3668
12.0
RHH5238_R3610
21.0
RHH5267_R3639
14.4
Memory CD4 T-cell Th1/Th17 nTPM: 17.9
Samples: 4
Max nTPM: 29.2
Min nTPM: 9.9
RHH5303_R3669
9.9
RHH5211_R3582
29.2
RHH5239_R3611
17.0
RHH5268_R3640
15.5
Memory CD4 T-cell Th17 nTPM: 16.5
Samples: 4
Max nTPM: 19.1
Min nTPM: 13.2
RHH5304_R3670
16.2
RHH5212_R3583
17.6
RHH5240_R3612
19.1
RHH5269_R3641
13.2
Memory CD4 T-cell Th2 nTPM: 14.5
Samples: 4
Max nTPM: 18.5
Min nTPM: 9.4
RHH5305_R3671
18.5
RHH5213_R3584
9.4
RHH5241_R3613
16.8
RHH5270_R3642
13.1
Naive CD4 T-cell nTPM: 15.1
Samples: 4
Max nTPM: 19.4
Min nTPM: 7.4
RHH5306_R3672
7.4
RHH5214_R3585
18.2
RHH5242_R3614
15.2
RHH5271_R3643
19.4
Naive CD8 T-cell nTPM: 14.5
Samples: 4
Max nTPM: 20.3
Min nTPM: 8.3
RHH5201_R3572
8.3
RHH5229_R3601
18.7
RHH5258_R3630
10.7
RHH5287_R3659
20.3
Non-Vd2 gdTCR nTPM: 16.9
Samples: 4
Max nTPM: 21.4
Min nTPM: 8.3
RHH5235_R3607
20.7
RHH5264_R3636
17.0
RHH5207_R3578
8.3
RHH5299_R3665
21.4
T-reg nTPM: 15.5
Samples: 4
Max nTPM: 19.5
Min nTPM: 10.7
RHH5301_R3667
16.3
RHH5237_R3609
15.3
RHH5266_R3638
19.5
RHH5209_R3580
10.7
Terminal effector memory CD4 T-cell nTPM: 9.8
Samples: 2
Max nTPM: 11.0
Min nTPM: 8.6
RHH5243_R3615
8.6
RHH5272_R3644
11.0
Terminal effector memory CD8 T-cell nTPM: 18.7
Samples: 4
Max nTPM: 35.0
Min nTPM: 11.9
RHH5232_R3604
11.9
RHH5204_R3575
35.0
RHH5261_R3633
15.9
RHH5296_R3662
12.0
Vd2 gdTCR nTPM: 20.4
Samples: 4
Max nTPM: 31.2
Min nTPM: 12.2
RHH5234_R3606
16.9
RHH5206_R3577
31.2
RHH5263_R3635
21.3
RHH5298_R3664
12.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
