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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
37.2
nTPM
HPA Brain:
63.5
nTPM
GTEx:
37.2
nTPM
FANTOM5:
66.3
Scaled Tags Per Million
Pig:
53.6
nTPM
Mouse:
70.4
nTPM
Allen mouse:
16.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
63.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 45.3
2219
Male, age 76, both hemispheres
50.6
1827
Male, age 72, unknown
49.8
2666
Male, age 74, left hemisphere
47.6
2828
Female, age 72, unknown
47.3
2586
Male, age 75, left hemisphere
46.6
1870
Female, age 42, unknown
46.4
1833
Male, age 53, unknown
43.6
2411
Female, age 72, unknown
43.2
1830
Male, age 51, unknown
40.2
2019
Male, age 18, unknown
38.1
Dorsal raphe nucleus nTPM: 51.3
2016
Female, age 72, unknown
61.8
1828
Male, age 53, unknown
51.6
2047
Male, age 72, unknown
49.4
2298
Female, age 72, unknown
48.9
2750
Male, age 76, both hemispheres
44.8
Inferior colliculus nTPM: 49.0
2849
Male, age 72, unknown
51.7
1890
Male, age 53, unknown
50.5
1848
Female, age 42, unknown
48.6
2097
Female, age 72, unknown
45.3
Median raphe nucleus nTPM: 52.7
2220
Male, age 76, midline
52.7
Periaquaductal grey, anterior nTPM: 54.0
2502
Female, age 75, unknown
65.0
1795
Male, age 51, unknown
48.8
1947
Male, age 18, unknown
48.2
Periaquaductal grey, dorsal nTPM: 63.5
2850
Male, age 76, both hemispheres
71.0
1840
Male, age 53, unknown
64.8
2464
Female, age 72, unknown
60.7
1831
Male, age 72, unknown
57.3
Periaquaductal grey, lateral nTPM: 51.1
2140
Male, age 76, both hemispheres
58.0
2053
Male, age 18, unknown
54.6
2272
Male, age 74, both hemispheres
40.8
Pretectal area nTPM: 49.0
1816
Male, age 51, unknown
57.4
2224
Female, age 72, unknown
53.3
1944
Female, age 72, unknown
50.5
2273
Male, age 74, both hemispheres
49.6
2825
Male, age 18, unknown
49.6
1815
Male, age 53, unknown
49.1
2667
Female, age 75, unknown
48.8
2316
Male, age 76, right hemisphere
46.9
1817
Female, age 42, unknown
46.0
2407
Male, age 75, both hemispheres
45.0
2007
Male, age 72, unknown
42.4
Red nucleus nTPM: 45.4
2503
Female, age 72, unknown
65.0
2725
Female, age 75, unknown
47.4
1954
Female, age 42, unknown
46.9
1821
Female, age 72, unknown
46.7
2823
Male, age 76, right hemisphere
46.4
2588
Male, age 74, left hemisphere
45.4
2227
Male, age 72, unknown
44.0
1904
Male, age 53, unknown
43.4
2769
Male, age 72, unknown
41.5
1865
Male, age 51, unknown
40.2
2584
Male, age 75, left hemisphere
40.2
2785
Male, age 18, unknown
38.1
Substantia nigra nTPM: 50.6
2699
Male, age 18, unknown
65.9
2241
Male, age 72, unknown
57.8
1916
Female, age 42, unknown
56.3
2665
Male, age 74, both hemispheres
52.8
1851
Male, age 51, unknown
51.8
1941
Male, age 53, unknown
49.0
1889
Female, age 72, unknown
48.7
2590
Female, age 75, unknown
42.4
2583
Male, age 75, right hemisphere
41.3
2409
Female, age 72, unknown
39.8
Superior colliculus nTPM: 46.6
2664
Male, age 75, both hemispheres
53.4
2087
Female, age 72, unknown
52.7
1995
Male, age 72, unknown
50.1
2261
Male, age 18, unknown
49.6
1913
Female, age 42, unknown
47.6
1839
Male, age 51, unknown
47.0
1796
Male, age 53, unknown
43.8
2587
Male, age 74, left hemisphere
43.3
2668
Female, age 75, unknown
42.6
1895
Male, age 76, right hemisphere
35.8
Ventral tegmental area nTPM: 48.4
1942
Male, age 51, unknown
53.7
2021
Male, age 53, unknown
51.8
2223
Female, age 72, unknown
50.0
2218
Male, age 76, both hemispheres
48.7
1915
Female, age 42, unknown
48.5
2410
Female, age 72, unknown
37.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
37.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 37.2
Samples: 139
Max nTPM: 87.6
Min nTPM: 19.4
Std nTPM: 11.9
Median nTPM: 34.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
87.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
75.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
71.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
63.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
61.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
60.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
60.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
59.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
58.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
58.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
57.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
55.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
54.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
53.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
53.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
52.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
51.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
51.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
49.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
47.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
47.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
47.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
47.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
46.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
46.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
46.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
45.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
44.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
44.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
44.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
44.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
43.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
43.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
43.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
42.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
42.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
42.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
42.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
41.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
41.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
41.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
41.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
41.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
41.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
41.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
40.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
40.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
40.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
40.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
40.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
40.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
40.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
39.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
39.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
39.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
39.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
38.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
38.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
38.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
38.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
37.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
37.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
36.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
36.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
36.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
35.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
35.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
35.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
35.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
34.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
34.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
34.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
34.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
34.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
34.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
34.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
34.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
34.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
33.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
33.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
33.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
33.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
33.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
32.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
32.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
32.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
32.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
31.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
31.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
31.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
31.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
31.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
31.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
30.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
30.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
30.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
29.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
29.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
29.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
29.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
29.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
29.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
29.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
28.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
28.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
28.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
28.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
28.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
27.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
27.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
27.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
26.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
26.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
26.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
26.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
25.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
25.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
25.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
24.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
24.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
24.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
24.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
24.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
24.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
24.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
23.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
23.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
23.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
22.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
22.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
22.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
22.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
21.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
21.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
20.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
20.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
19.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
19.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
19.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
70.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 70.4
Samples: 4
Max nTPM: 75.4
Min nTPM: 63.0
Sample A
Male
72.8
Sample B
Male
75.4
Sample C
Female
70.3
Sample D
Female
63.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.