MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.2 nTPM
HPA Brain:32.8 nTPM
GTEx:29.2 nTPM
FANTOM5:60.2 Scaled Tags Per Million
Pig:154.9 nTPM
Mouse:15.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.3
2828 Female, age 72, unknown 37.7
2586 Male, age 75, left hemisphere 21.7
1827 Male, age 72, unknown 21.0
1870 Female, age 42, unknown 19.9
2666 Male, age 74, left hemisphere 18.8
1833 Male, age 53, unknown 16.8
1830 Male, age 51, unknown 16.5
2411 Female, age 72, unknown 15.9
2019 Male, age 18, unknown 13.5
2219 Male, age 76, both hemispheres 11.6
Dorsal raphe nucleus
nTPM: 27.7
2016 Female, age 72, unknown 37.0
2298 Female, age 72, unknown 34.6
1828 Male, age 53, unknown 29.2
2047 Male, age 72, unknown 22.1
2750 Male, age 76, both hemispheres 15.7
Inferior colliculus
nTPM: 21.4
1848 Female, age 42, unknown 24.3
2097 Female, age 72, unknown 21.4
1890 Male, age 53, unknown 20.3
2849 Male, age 72, unknown 19.8
Median raphe nucleus
nTPM: 12.7
2220 Male, age 76, midline 12.7
Periaquaductal grey, anterior
nTPM: 23.7
1795 Male, age 51, unknown 30.8
2502 Female, age 75, unknown 22.3
1947 Male, age 18, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 27.8
2850 Male, age 76, both hemispheres 35.7
1840 Male, age 53, unknown 27.5
1831 Male, age 72, unknown 26.0
2464 Female, age 72, unknown 21.9
Periaquaductal grey, lateral
nTPM: 32.8
2053 Male, age 18, unknown 37.6
2140 Male, age 76, both hemispheres 33.9
2272 Male, age 74, both hemispheres 26.8
Pretectal area
nTPM: 24.9
2667 Female, age 75, unknown 34.0
2273 Male, age 74, both hemispheres 33.1
2224 Female, age 72, unknown 27.4
2825 Male, age 18, unknown 27.1
1944 Female, age 72, unknown 26.3
1815 Male, age 53, unknown 24.6
2407 Male, age 75, both hemispheres 22.7
1817 Female, age 42, unknown 21.6
2316 Male, age 76, right hemisphere 21.0
1816 Male, age 51, unknown 20.1
2007 Male, age 72, unknown 15.8
Red nucleus
nTPM: 22.5
2503 Female, age 72, unknown 28.6
2725 Female, age 75, unknown 27.4
2769 Male, age 72, unknown 26.8
1954 Female, age 42, unknown 25.4
2227 Male, age 72, unknown 24.7
2823 Male, age 76, right hemisphere 22.9
1821 Female, age 72, unknown 22.3
1904 Male, age 53, unknown 20.9
1865 Male, age 51, unknown 20.4
2785 Male, age 18, unknown 19.4
2588 Male, age 74, left hemisphere 17.6
2584 Male, age 75, left hemisphere 14.1
Substantia nigra
nTPM: 17.9
2699 Male, age 18, unknown 25.0
1851 Male, age 51, unknown 21.3
1916 Female, age 42, unknown 20.3
2409 Female, age 72, unknown 19.2
1889 Female, age 72, unknown 19.0
2241 Male, age 72, unknown 16.5
1941 Male, age 53, unknown 15.3
2583 Male, age 75, right hemisphere 14.4
2590 Female, age 75, unknown 13.9
2665 Male, age 74, both hemispheres 13.7
Superior colliculus
nTPM: 23.3
1995 Male, age 72, unknown 32.8
2664 Male, age 75, both hemispheres 29.2
1796 Male, age 53, unknown 24.8
2261 Male, age 18, unknown 24.7
2087 Female, age 72, unknown 24.3
1913 Female, age 42, unknown 22.1
1839 Male, age 51, unknown 21.1
2587 Male, age 74, left hemisphere 20.8
2668 Female, age 75, unknown 17.1
1895 Male, age 76, right hemisphere 15.6
Ventral tegmental area
nTPM: 18.4
1915 Female, age 42, unknown 23.6
2021 Male, age 53, unknown 20.9
2410 Female, age 72, unknown 18.1
1942 Male, age 51, unknown 17.8
2218 Male, age 76, both hemispheres 16.7
2223 Female, age 72, unknown 13.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.2
Samples: 139

Max nTPM: 75.5
Min nTPM: 4.7
Std nTPM: 11.0
Median nTPM: 28.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 75.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 64.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 58.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 53.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 50.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 50.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 48.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 48.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 47.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 46.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 44.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.2
FF:10158-103A5 76 years, female 60.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 154.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 154.9
Samples: 4

Max nTPM: 196.6
Min nTPM: 119.1
Sample A Female 164.6
Sample B Female 119.1
Sample C Male 139.4
Sample D Male 196.6
Midbrain
nTPM: 145.1
Samples: 4

Max nTPM: 225.7
Min nTPM: 89.1
Sample A Female 225.7
Sample B Female 143.7
Sample C Male 121.8
Sample D Male 89.1
Periaqueductal gray
nTPM: 131.9
Samples: 3

Max nTPM: 144.8
Min nTPM: 117.8
Sample B Female 144.8
Sample C Male 133.0
Sample D Male 117.8
Superior colliculi
nTPM: 141.6
Samples: 4

Max nTPM: 169.3
Min nTPM: 99.3
Sample A Female 169.3
Sample B Female 99.3
Sample C Male 156.5
Sample D Male 141.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.2
Samples: 4

Max nTPM: 16.8
Min nTPM: 14.0
Sample A Male 16.8
Sample B Male 14.0
Sample C Female 14.4
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69261401 Antisense, RP_050113_02_H11, Mouse strain C57BL/6J (56 days, male) 1.2
71764287 Antisense, RP_050921_03_E02, Mouse strain C57BL/6J (56 days, male) 0.0

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