HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:20.5 nTPM
HPA Brain:25.9 nTPM
GTEx:20.5 nTPM
FANTOM5:17.7 Scaled Tags Per Million
Pig:75.2 nTPM
Mouse:14.9 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021603
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Hippocampus
nTPM: 25.6
2529 Female, age 94, left hemisphere 31.2
1911 Female, age 85, right hemisphere 28.4
2148 Female, age 91, left hemisphere 26.0
1898 Male, age 80, left hemisphere 23.4
1855 Male, age 76, left hemisphere 23.1
2621 Female, age 67, right hemisphere 21.5
Dentate gyrus
nTPM: 19.9
2246 Female, age 85, both hemispheres 23.2
2528 Male, age 74, both hemispheres 22.7
2010 Male, age 76, both hemispheres 21.4
1927 Female, age 91, both hemispheres 20.4
2530 Female, age 94, left hemisphere 16.0
2531 Female, age 67, both hemispheres 15.5
Entorhinal gyrus
nTPM: 22.7
2117 Female, age 91, right hemisphere 29.2
1938 Female, age 85, left hemisphere 26.3
1787 Male, age 76, left hemisphere 26.1
2686 Male, age 75, right hemisphere 21.2
2764 Male, age 80, right hemisphere 20.1
2613 Female, age 94, left hemisphere 13.5
Hippocampus, CA1
nTPM: 22.3
1873 Female, age 85, both hemispheres 26.8
2527 Male, age 74, both hemispheres 26.8
2082 Female, age 91, right hemisphere 23.1
2749 Male, age 80, left hemisphere 17.6
2045 Male, age 76, both hemispheres 17.5
Hippocampus, CA2
nTPM: 22.8
2113 Female, age 91, right hemisphere 27.2
1940 Female, age 85, left hemisphere 26.4
2249 Male, age 74, both hemispheres 24.2
1963 Male, age 80, left hemisphere 20.9
2437 Female, age 94, left hemisphere 19.0
1892 Male, age 76, both hemispheres 18.9
Hippocampus, CA3
nTPM: 22.9
2436 Male, age 74, both hemispheres 28.4
1891 Female, age 85, both hemispheres 27.9
1867 Male, age 76, both hemispheres 24.5
2861 Female, age 67, both hemispheres 21.1
2620 Female, age 94, left hemisphere 18.4
2137 Male, age 80, left hemisphere 17.1
Parahippocampal cortex
nTPM: 24.1
2692 Male, age 74, both hemispheres 29.9
2622 Female, age 67, right hemisphere 26.4
1933 Female, age 85, both hemispheres 26.3
2250 Female, age 67, right hemisphere 25.6
1990 Female, age 91, right hemisphere 23.6
2245 Female, age 91, both hemispheres 23.6
1850 Male, age 80, both hemispheres 23.2
2018 Male, age 76, both hemispheres 22.9
2693 Female, age 94, both hemispheres 19.9
2532 Female, age 72, left hemisphere 19.5
Perirhinal gyrus
nTPM: 22.2
1841 Female, age 85, right hemisphere 24.0
1847 Female, age 91, left hemisphere 23.2
1794 Male, age 80, right hemisphere 21.9
2521 Female, age 94, right hemisphere 21.2
2848 Male, age 76, right hemisphere 20.8
Subiculum
nTPM: 25.9
2619 Male, age 74, both hemispheres 29.4
2729 Female, age 91, right hemisphere 28.2
2042 Male, age 76, both hemispheres 27.3
2438 Female, age 94, left hemisphere 24.9
1901 Male, age 80, both hemispheres 22.8
1977 Female, age 85, both hemispheres 22.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.5
Samples: 197

Max nTPM: 45.5
Min nTPM: 7.3
Std nTPM: 7.2
Median nTPM: 19.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 45.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 43.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 41.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 38.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 37.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 36.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 36.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 36.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 35.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 35.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 34.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 17.7
FF:10153-102I9 76 years, female 23.0
FF:10169-103B7 60 years, female 12.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 75.2
Pig sample Sample description nTPM
Subiculum
nTPM: 64.0
Samples: 4

Max nTPM: 69.3
Min nTPM: 56.5
Sample A Female 66.2
Sample B Female 64.0
Sample C Male 56.5
Sample D Male 69.3
Dorsal hippocampus
nTPM: 75.2
Samples: 4

Max nTPM: 83.9
Min nTPM: 61.3
Sample A Female 83.3
Sample B Female 61.3
Sample C Male 83.9
Sample D Male 72.2
Entorhinal cortex
nTPM: 66.2
Samples: 4

Max nTPM: 71.2
Min nTPM: 56.5
Sample A Female 56.5
Sample B Female 71.2
Sample C Male 68.8
Sample D Male 68.4
Ventral hippocampus
nTPM: 69.6
Samples: 4

Max nTPM: 82.1
Min nTPM: 55.6
Sample A Female 55.6
Sample B Female 60.3
Sample C Male 80.2
Sample D Male 82.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.7
Samples: 4

Max nTPM: 14.9
Min nTPM: 9.9
Sample A Male 13.4
Sample B Male 9.9
Sample C Female 14.9
Sample D Female 12.4
Hippocampal formation
nTPM: 15.0
Samples: 4

Max nTPM: 16.6
Min nTPM: 13.8
Sample A Male 13.8
Sample B Male 15.1
Sample C Female 14.3
Sample D Female 16.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
69838069 Antisense, RP_050224_02_C05, Mouse strain C57BL/6J (56 days, male) 0.2

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