MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.3 nTPM
HPA Brain:40.1 nTPM
GTEx:82.3 nTPM
FANTOM5:38.9 Scaled Tags Per Million
Pig:10.0 nTPM
Mouse:10.9 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.9
2666 Male, age 74, left hemisphere 35.6
2828 Female, age 72, unknown 35.2
1870 Female, age 42, unknown 26.3
1827 Male, age 72, unknown 25.6
2586 Male, age 75, left hemisphere 22.4
1833 Male, age 53, unknown 21.8
1830 Male, age 51, unknown 20.8
2411 Female, age 72, unknown 17.8
2219 Male, age 76, both hemispheres 16.9
2019 Male, age 18, unknown 16.5
Dorsal raphe nucleus
nTPM: 29.4
2016 Female, age 72, unknown 40.6
1828 Male, age 53, unknown 35.1
2298 Female, age 72, unknown 27.6
2047 Male, age 72, unknown 23.5
2750 Male, age 76, both hemispheres 20.4
Inferior colliculus
nTPM: 25.0
2849 Male, age 72, unknown 29.0
1848 Female, age 42, unknown 25.9
1890 Male, age 53, unknown 24.9
2097 Female, age 72, unknown 20.4
Median raphe nucleus
nTPM: 24.2
2220 Male, age 76, midline 24.2
Periaquaductal grey, anterior
nTPM: 29.0
1795 Male, age 51, unknown 33.9
2502 Female, age 75, unknown 29.9
1947 Male, age 18, unknown 23.1
Periaquaductal grey, dorsal
nTPM: 40.1
2850 Male, age 76, both hemispheres 53.8
1831 Male, age 72, unknown 41.1
1840 Male, age 53, unknown 37.0
2464 Female, age 72, unknown 28.6
Periaquaductal grey, lateral
nTPM: 38.8
2053 Male, age 18, unknown 44.5
2140 Male, age 76, both hemispheres 42.6
2272 Male, age 74, both hemispheres 29.4
Pretectal area
nTPM: 27.0
2316 Male, age 76, right hemisphere 34.1
2825 Male, age 18, unknown 34.0
2273 Male, age 74, both hemispheres 31.2
2224 Female, age 72, unknown 29.3
2407 Male, age 75, both hemispheres 29.1
2667 Female, age 75, unknown 27.9
1815 Male, age 53, unknown 24.5
1816 Male, age 51, unknown 24.5
1817 Female, age 42, unknown 23.7
1944 Female, age 72, unknown 22.4
2007 Male, age 72, unknown 16.7
Red nucleus
nTPM: 24.3
2725 Female, age 75, unknown 30.0
2503 Female, age 72, unknown 29.1
2227 Male, age 72, unknown 28.7
1954 Female, age 42, unknown 26.9
1865 Male, age 51, unknown 26.7
1821 Female, age 72, unknown 24.9
2769 Male, age 72, unknown 24.7
2823 Male, age 76, right hemisphere 24.1
2588 Male, age 74, left hemisphere 21.3
1904 Male, age 53, unknown 21.2
2584 Male, age 75, left hemisphere 19.3
2785 Male, age 18, unknown 15.1
Substantia nigra
nTPM: 28.1
2699 Male, age 18, unknown 56.2
2409 Female, age 72, unknown 35.7
2665 Male, age 74, both hemispheres 28.9
1851 Male, age 51, unknown 25.6
1941 Male, age 53, unknown 25.4
1916 Female, age 42, unknown 25.1
2241 Male, age 72, unknown 22.7
1889 Female, age 72, unknown 22.1
2590 Female, age 75, unknown 21.9
2583 Male, age 75, right hemisphere 17.8
Superior colliculus
nTPM: 27.4
1995 Male, age 72, unknown 36.3
1913 Female, age 42, unknown 31.9
2587 Male, age 74, left hemisphere 30.7
2664 Male, age 75, both hemispheres 30.2
2087 Female, age 72, unknown 28.7
1839 Male, age 51, unknown 26.0
1796 Male, age 53, unknown 24.5
2668 Female, age 75, unknown 24.0
2261 Male, age 18, unknown 23.2
1895 Male, age 76, right hemisphere 18.8
Ventral tegmental area
nTPM: 27.3
2021 Male, age 53, unknown 34.5
1915 Female, age 42, unknown 31.5
2223 Female, age 72, unknown 27.1
2218 Male, age 76, both hemispheres 26.7
1942 Male, age 51, unknown 26.5
2410 Female, age 72, unknown 17.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 82.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.3
Samples: 139

Max nTPM: 205.8
Min nTPM: 20.8
Std nTPM: 37.9
Median nTPM: 74.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 205.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 203.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 175.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 169.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 165.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 152.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 152.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 149.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 147.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 147.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 146.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.9
FF:10158-103A5 76 years, female 38.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.6
Samples: 4

Max nTPM: 10.0
Min nTPM: 9.2
Sample A Female 9.3
Sample B Female 10.0
Sample C Male 9.2
Sample D Male 9.7
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 14.3
Min nTPM: 6.0
Sample A Female 14.3
Sample B Female 8.1
Sample C Male 7.8
Sample D Male 6.0
Periaqueductal gray
nTPM: 10.0
Samples: 3

Max nTPM: 11.2
Min nTPM: 8.6
Sample B Female 8.6
Sample C Male 11.2
Sample D Male 10.1
Superior colliculi
nTPM: 9.5
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.3
Sample A Female 9.4
Sample B Female 11.3
Sample C Male 9.0
Sample D Male 8.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.7
Sample A Male 11.8
Sample B Male 11.2
Sample C Female 9.7
Sample D Female 10.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
68637581 Antisense, RP_050126_01_B09, Mouse strain C57BL/6J (56 days, male) 5.8

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