MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.7 nTPM
HPA Brain:27.5 nTPM
GTEx:35.7 nTPM
FANTOM5:41.2 Scaled Tags Per Million
Pig:41.7 nTPM
Mouse:17.9 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.0
2019 Male, age 18, unknown 26.6
2411 Female, age 72, unknown 26.6
1870 Female, age 42, unknown 25.3
2586 Male, age 75, left hemisphere 24.8
2828 Female, age 72, unknown 23.8
1830 Male, age 51, unknown 22.6
1833 Male, age 53, unknown 22.3
1827 Male, age 72, unknown 21.8
2219 Male, age 76, both hemispheres 21.3
2666 Male, age 74, left hemisphere 15.2
Dorsal raphe nucleus
nTPM: 27.5
2298 Female, age 72, unknown 32.8
2016 Female, age 72, unknown 28.6
2047 Male, age 72, unknown 26.5
1828 Male, age 53, unknown 25.8
2750 Male, age 76, both hemispheres 23.7
Inferior colliculus
nTPM: 24.1
2097 Female, age 72, unknown 28.7
1848 Female, age 42, unknown 24.1
1890 Male, age 53, unknown 23.9
2849 Male, age 72, unknown 19.8
Median raphe nucleus
nTPM: 26.0
2220 Male, age 76, midline 26.0
Periaquaductal grey, anterior
nTPM: 23.8
2502 Female, age 75, unknown 25.4
1947 Male, age 18, unknown 23.2
1795 Male, age 51, unknown 22.9
Periaquaductal grey, dorsal
nTPM: 22.6
2464 Female, age 72, unknown 23.8
1840 Male, age 53, unknown 23.5
1831 Male, age 72, unknown 22.2
2850 Male, age 76, both hemispheres 20.9
Periaquaductal grey, lateral
nTPM: 23.5
2272 Male, age 74, both hemispheres 26.1
2053 Male, age 18, unknown 24.5
2140 Male, age 76, both hemispheres 20.0
Pretectal area
nTPM: 24.9
2273 Male, age 74, both hemispheres 30.5
2007 Male, age 72, unknown 26.4
1815 Male, age 53, unknown 26.3
1817 Female, age 42, unknown 25.6
2224 Female, age 72, unknown 25.4
2667 Female, age 75, unknown 24.2
1944 Female, age 72, unknown 23.9
1816 Male, age 51, unknown 23.7
2407 Male, age 75, both hemispheres 23.3
2316 Male, age 76, right hemisphere 23.2
2825 Male, age 18, unknown 21.5
Red nucleus
nTPM: 26.0
1821 Female, age 72, unknown 33.7
1865 Male, age 51, unknown 29.6
1904 Male, age 53, unknown 27.4
2769 Male, age 72, unknown 27.4
1954 Female, age 42, unknown 26.4
2227 Male, age 72, unknown 25.8
2503 Female, age 72, unknown 25.7
2823 Male, age 76, right hemisphere 25.4
2725 Female, age 75, unknown 24.7
2785 Male, age 18, unknown 24.7
2584 Male, age 75, left hemisphere 22.0
2588 Male, age 74, left hemisphere 19.2
Substantia nigra
nTPM: 26.4
1916 Female, age 42, unknown 29.3
2699 Male, age 18, unknown 28.4
1851 Male, age 51, unknown 27.9
2241 Male, age 72, unknown 27.9
2665 Male, age 74, both hemispheres 27.4
1941 Male, age 53, unknown 27.2
1889 Female, age 72, unknown 26.5
2583 Male, age 75, right hemisphere 26.3
2590 Female, age 75, unknown 25.7
2409 Female, age 72, unknown 16.9
Superior colliculus
nTPM: 23.5
2664 Male, age 75, both hemispheres 27.8
1995 Male, age 72, unknown 25.5
1895 Male, age 76, right hemisphere 25.0
2587 Male, age 74, left hemisphere 23.9
2668 Female, age 75, unknown 23.9
1913 Female, age 42, unknown 22.8
1796 Male, age 53, unknown 22.4
1839 Male, age 51, unknown 22.0
2261 Male, age 18, unknown 21.8
2087 Female, age 72, unknown 20.1
Ventral tegmental area
nTPM: 25.7
2410 Female, age 72, unknown 29.5
2218 Male, age 76, both hemispheres 27.5
1915 Female, age 42, unknown 24.5
2223 Female, age 72, unknown 24.4
1942 Male, age 51, unknown 24.3
2021 Male, age 53, unknown 23.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.7
Samples: 139

Max nTPM: 56.7
Min nTPM: 18.4
Std nTPM: 7.4
Median nTPM: 35.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 56.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 55.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 55.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 52.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 52.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 49.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 49.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 48.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 48.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 48.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 47.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.2
FF:10158-103A5 76 years, female 41.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.0
Samples: 4

Max nTPM: 52.8
Min nTPM: 34.2
Sample A Female 52.8
Sample B Female 38.6
Sample C Male 34.3
Sample D Male 34.2
Midbrain
nTPM: 41.7
Samples: 4

Max nTPM: 66.5
Min nTPM: 28.1
Sample A Female 66.5
Sample B Female 40.9
Sample C Male 28.1
Sample D Male 31.1
Periaqueductal gray
nTPM: 35.3
Samples: 3

Max nTPM: 36.6
Min nTPM: 34.5
Sample B Female 34.9
Sample C Male 36.6
Sample D Male 34.5
Superior colliculi
nTPM: 36.3
Samples: 4

Max nTPM: 44.9
Min nTPM: 32.1
Sample A Female 44.9
Sample B Female 32.1
Sample C Male 33.3
Sample D Male 35.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 20.0
Min nTPM: 15.3
Sample A Male 20.0
Sample B Male 18.1
Sample C Female 15.3
Sample D Female 18.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
69549659 Antisense, RP_050317_04_B12, Mouse strain C57BL/6J (56 days, male) 8.2

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