MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA Brain:16.6 nTPM
GTEx:5.6 nTPM
FANTOM5:56.1 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:30.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.9
2828 Female, age 72, unknown 19.6
2666 Male, age 74, left hemisphere 17.8
1870 Female, age 42, unknown 17.3
2586 Male, age 75, left hemisphere 17.2
2219 Male, age 76, both hemispheres 17.0
1827 Male, age 72, unknown 16.5
1833 Male, age 53, unknown 13.6
1830 Male, age 51, unknown 11.9
2019 Male, age 18, unknown 11.2
2411 Female, age 72, unknown 6.8
Dorsal raphe nucleus
nTPM: 14.3
2298 Female, age 72, unknown 16.0
1828 Male, age 53, unknown 15.0
2016 Female, age 72, unknown 13.7
2047 Male, age 72, unknown 13.7
2750 Male, age 76, both hemispheres 13.2
Inferior colliculus
nTPM: 12.8
2849 Male, age 72, unknown 16.7
1848 Female, age 42, unknown 13.3
2097 Female, age 72, unknown 11.1
1890 Male, age 53, unknown 10.1
Median raphe nucleus
nTPM: 16.1
2220 Male, age 76, midline 16.1
Periaquaductal grey, anterior
nTPM: 16.6
1947 Male, age 18, unknown 19.4
1795 Male, age 51, unknown 17.6
2502 Female, age 75, unknown 12.8
Periaquaductal grey, dorsal
nTPM: 15.6
1840 Male, age 53, unknown 18.6
2850 Male, age 76, both hemispheres 16.2
1831 Male, age 72, unknown 13.9
2464 Female, age 72, unknown 13.6
Periaquaductal grey, lateral
nTPM: 14.7
2272 Male, age 74, both hemispheres 17.7
2053 Male, age 18, unknown 13.5
2140 Male, age 76, both hemispheres 13.0
Pretectal area
nTPM: 16.2
1815 Male, age 53, unknown 20.7
1944 Female, age 72, unknown 20.5
1816 Male, age 51, unknown 18.9
2224 Female, age 72, unknown 17.3
2007 Male, age 72, unknown 16.6
2825 Male, age 18, unknown 15.9
2667 Female, age 75, unknown 15.7
1817 Female, age 42, unknown 13.9
2273 Male, age 74, both hemispheres 13.1
2316 Male, age 76, right hemisphere 13.1
2407 Male, age 75, both hemispheres 12.4
Red nucleus
nTPM: 13.2
2588 Male, age 74, left hemisphere 18.6
1954 Female, age 42, unknown 16.5
2823 Male, age 76, right hemisphere 15.0
2725 Female, age 75, unknown 14.9
2584 Male, age 75, left hemisphere 14.6
2769 Male, age 72, unknown 13.7
2785 Male, age 18, unknown 12.9
2503 Female, age 72, unknown 12.3
2227 Male, age 72, unknown 11.7
1821 Female, age 72, unknown 11.3
1865 Male, age 51, unknown 8.8
1904 Male, age 53, unknown 7.6
Substantia nigra
nTPM: 15.3
2665 Male, age 74, both hemispheres 22.5
2409 Female, age 72, unknown 17.3
2590 Female, age 75, unknown 17.1
2699 Male, age 18, unknown 17.0
1941 Male, age 53, unknown 16.4
1851 Male, age 51, unknown 15.0
1916 Female, age 42, unknown 14.9
2583 Male, age 75, right hemisphere 14.1
2241 Male, age 72, unknown 12.1
1889 Female, age 72, unknown 6.9
Superior colliculus
nTPM: 16.0
1839 Male, age 51, unknown 19.0
1796 Male, age 53, unknown 18.5
1913 Female, age 42, unknown 16.9
2664 Male, age 75, both hemispheres 16.9
2261 Male, age 18, unknown 15.9
2087 Female, age 72, unknown 15.7
2668 Female, age 75, unknown 15.4
1995 Male, age 72, unknown 14.5
1895 Male, age 76, right hemisphere 14.3
2587 Male, age 74, left hemisphere 12.5
Ventral tegmental area
nTPM: 14.2
2218 Male, age 76, both hemispheres 16.4
1942 Male, age 51, unknown 15.9
2223 Female, age 72, unknown 15.0
2021 Male, age 53, unknown 14.4
2410 Female, age 72, unknown 12.3
1915 Female, age 42, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.6
Samples: 139

Max nTPM: 10.8
Min nTPM: 2.6
Std nTPM: 1.6
Median nTPM: 5.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 10.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 10.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 8.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 8.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 8.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 8.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 8.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 8.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 8.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 8.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.1
FF:10158-103A5 76 years, female 56.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.3
Samples: 4

Max nTPM: 34.8
Min nTPM: 28.8
Sample A Female 31.5
Sample B Female 28.8
Sample C Male 34.8
Sample D Male 34.2
Midbrain
nTPM: 33.7
Samples: 4

Max nTPM: 40.7
Min nTPM: 26.5
Sample A Female 33.8
Sample B Female 26.5
Sample C Male 40.7
Sample D Male 33.9
Periaqueductal gray
nTPM: 29.4
Samples: 3

Max nTPM: 32.0
Min nTPM: 27.0
Sample B Female 27.0
Sample C Male 32.0
Sample D Male 29.2
Superior colliculi
nTPM: 33.8
Samples: 4

Max nTPM: 35.3
Min nTPM: 31.8
Sample A Female 31.8
Sample B Female 34.2
Sample C Male 33.9
Sample D Male 35.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.5
Samples: 4

Max nTPM: 32.3
Min nTPM: 28.6
Sample A Male 29.4
Sample B Male 28.6
Sample C Female 31.7
Sample D Female 32.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
100144709 Antisense, RP_110421_03_E04, Mouse strain C57BL/6J (56 days, male) 0.4

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