MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.9 nTPM
HPA Brain:58.4 nTPM
GTEx:49.9 nTPM
FANTOM5:158.5 Scaled Tags Per Million
Pig:69.7 nTPM
Mouse:167.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.7
1870 Female, age 42, unknown 68.3
2411 Female, age 72, unknown 65.3
1830 Male, age 51, unknown 46.6
2019 Male, age 18, unknown 46.5
1833 Male, age 53, unknown 45.7
1827 Male, age 72, unknown 39.4
2828 Female, age 72, unknown 39.3
2219 Male, age 76, both hemispheres 36.8
2666 Male, age 74, left hemisphere 34.8
2586 Male, age 75, left hemisphere 33.9
Dorsal raphe nucleus
nTPM: 53.8
2750 Male, age 76, both hemispheres 77.9
2298 Female, age 72, unknown 52.9
2047 Male, age 72, unknown 49.7
1828 Male, age 53, unknown 45.9
2016 Female, age 72, unknown 42.6
Inferior colliculus
nTPM: 37.1
1890 Male, age 53, unknown 40.8
2097 Female, age 72, unknown 38.9
1848 Female, age 42, unknown 36.9
2849 Male, age 72, unknown 32.0
Median raphe nucleus
nTPM: 58.4
2220 Male, age 76, midline 58.4
Periaquaductal grey, anterior
nTPM: 38.9
1947 Male, age 18, unknown 39.9
2502 Female, age 75, unknown 39.0
1795 Male, age 51, unknown 37.7
Periaquaductal grey, dorsal
nTPM: 38.2
1840 Male, age 53, unknown 40.4
1831 Male, age 72, unknown 38.6
2850 Male, age 76, both hemispheres 37.8
2464 Female, age 72, unknown 36.1
Periaquaductal grey, lateral
nTPM: 40.2
2272 Male, age 74, both hemispheres 43.5
2053 Male, age 18, unknown 42.3
2140 Male, age 76, both hemispheres 34.7
Pretectal area
nTPM: 39.8
2273 Male, age 74, both hemispheres 51.5
2224 Female, age 72, unknown 46.5
2825 Male, age 18, unknown 44.8
2667 Female, age 75, unknown 41.9
2007 Male, age 72, unknown 40.5
1815 Male, age 53, unknown 38.1
1817 Female, age 42, unknown 36.0
1816 Male, age 51, unknown 35.4
1944 Female, age 72, unknown 35.3
2316 Male, age 76, right hemisphere 35.2
2407 Male, age 75, both hemispheres 32.1
Red nucleus
nTPM: 49.6
1821 Female, age 72, unknown 65.7
1865 Male, age 51, unknown 54.4
2823 Male, age 76, right hemisphere 54.2
2769 Male, age 72, unknown 52.2
2503 Female, age 72, unknown 50.2
2227 Male, age 72, unknown 50.1
1954 Female, age 42, unknown 49.9
1904 Male, age 53, unknown 49.1
2588 Male, age 74, left hemisphere 43.7
2584 Male, age 75, left hemisphere 43.3
2725 Female, age 75, unknown 42.1
2785 Male, age 18, unknown 40.3
Substantia nigra
nTPM: 45.3
2241 Male, age 72, unknown 55.5
1916 Female, age 42, unknown 52.5
1941 Male, age 53, unknown 51.5
1851 Male, age 51, unknown 49.6
1889 Female, age 72, unknown 48.6
2699 Male, age 18, unknown 44.7
2590 Female, age 75, unknown 44.6
2409 Female, age 72, unknown 38.6
2583 Male, age 75, right hemisphere 35.5
2665 Male, age 74, both hemispheres 31.9
Superior colliculus
nTPM: 40.0
2587 Male, age 74, left hemisphere 55.0
1913 Female, age 42, unknown 54.3
2668 Female, age 75, unknown 43.0
1995 Male, age 72, unknown 38.7
1839 Male, age 51, unknown 37.4
1895 Male, age 76, right hemisphere 37.4
2261 Male, age 18, unknown 37.0
1796 Male, age 53, unknown 35.2
2087 Female, age 72, unknown 34.6
2664 Male, age 75, both hemispheres 27.3
Ventral tegmental area
nTPM: 54.0
2223 Female, age 72, unknown 74.1
2410 Female, age 72, unknown 52.7
2021 Male, age 53, unknown 50.9
1942 Male, age 51, unknown 49.6
2218 Male, age 76, both hemispheres 48.9
1915 Female, age 42, unknown 47.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.9
Samples: 139

Max nTPM: 127.0
Min nTPM: 27.9
Std nTPM: 16.6
Median nTPM: 44.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 127.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 119.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 110.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 104.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 98.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 94.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 84.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 81.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 78.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 73.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 70.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 158.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 158.5
FF:10158-103A5 76 years, female 158.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.7
Samples: 4

Max nTPM: 92.7
Min nTPM: 52.5
Sample A Female 92.7
Sample B Female 52.5
Sample C Male 79.6
Sample D Male 53.9
Midbrain
nTPM: 69.6
Samples: 4

Max nTPM: 84.8
Min nTPM: 58.7
Sample A Female 84.8
Sample B Female 63.3
Sample C Male 71.4
Sample D Male 58.7
Periaqueductal gray
nTPM: 59.7
Samples: 3

Max nTPM: 69.0
Min nTPM: 51.2
Sample B Female 59.0
Sample C Male 69.0
Sample D Male 51.2
Superior colliculi
nTPM: 66.5
Samples: 4

Max nTPM: 81.1
Min nTPM: 46.4
Sample A Female 81.1
Sample B Female 46.4
Sample C Male 78.9
Sample D Male 59.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 167.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 167.4
Samples: 4

Max nTPM: 170.8
Min nTPM: 165.5
Sample A Male 166.4
Sample B Male 165.5
Sample C Female 166.8
Sample D Female 170.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71724840 Antisense, RP_050921_01_G11, Mouse strain C57BL/6J (56 days, male) 0.1
73635772 Antisense, RP_050921_01_G11, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org