HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:35.8 nTPM
HPA Brain:38.3 nTPM
GTEx:35.8 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:491.9 nTPM
Allen mouse:18.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028167
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.3
Sample id Sample description nTPM
Hippocampus
nTPM: 31.2
1898 Male, age 80, left hemisphere 34.7
2148 Female, age 91, left hemisphere 33.9
2621 Female, age 67, right hemisphere 31.8
1855 Male, age 76, left hemisphere 31.3
1911 Female, age 85, right hemisphere 27.9
2529 Female, age 94, left hemisphere 27.6
Dentate gyrus
nTPM: 32.5
2531 Female, age 67, both hemispheres 40.6
1927 Female, age 91, both hemispheres 38.4
2010 Male, age 76, both hemispheres 34.2
2528 Male, age 74, both hemispheres 29.3
2246 Female, age 85, both hemispheres 27.0
2530 Female, age 94, left hemisphere 25.6
Entorhinal gyrus
nTPM: 33.8
1787 Male, age 76, left hemisphere 38.2
2686 Male, age 75, right hemisphere 37.3
2613 Female, age 94, left hemisphere 35.1
2764 Male, age 80, right hemisphere 33.7
1938 Female, age 85, left hemisphere 32.9
2117 Female, age 91, right hemisphere 25.9
Hippocampus, CA1
nTPM: 37.8
2749 Male, age 80, left hemisphere 57.8
1873 Female, age 85, both hemispheres 36.9
2045 Male, age 76, both hemispheres 35.0
2527 Male, age 74, both hemispheres 32.2
2082 Female, age 91, right hemisphere 26.9
Hippocampus, CA2
nTPM: 32.8
1963 Male, age 80, left hemisphere 41.3
1892 Male, age 76, both hemispheres 39.0
2437 Female, age 94, left hemisphere 30.9
1940 Female, age 85, left hemisphere 29.8
2249 Male, age 74, both hemispheres 28.2
2113 Female, age 91, right hemisphere 27.8
Hippocampus, CA3
nTPM: 38.2
2620 Female, age 94, left hemisphere 47.7
2137 Male, age 80, left hemisphere 47.3
2861 Female, age 67, both hemispheres 39.2
1867 Male, age 76, both hemispheres 36.0
1891 Female, age 85, both hemispheres 30.5
2436 Male, age 74, both hemispheres 28.4
Parahippocampal cortex
nTPM: 32.3
2245 Female, age 91, both hemispheres 36.3
1850 Male, age 80, both hemispheres 36.1
2622 Female, age 67, right hemisphere 34.2
1933 Female, age 85, both hemispheres 33.8
2693 Female, age 94, both hemispheres 33.0
1990 Female, age 91, right hemisphere 32.1
2250 Female, age 67, right hemisphere 31.5
2018 Male, age 76, both hemispheres 30.4
2532 Female, age 72, left hemisphere 29.6
2692 Male, age 74, both hemispheres 26.1
Perirhinal gyrus
nTPM: 38.3
1847 Female, age 91, left hemisphere 44.9
1794 Male, age 80, right hemisphere 42.3
1841 Female, age 85, right hemisphere 37.5
2521 Female, age 94, right hemisphere 34.0
2848 Male, age 76, right hemisphere 32.9
Subiculum
nTPM: 28.2
1977 Female, age 85, both hemispheres 31.9
1901 Male, age 80, both hemispheres 31.2
2619 Male, age 74, both hemispheres 28.8
2438 Female, age 94, left hemisphere 27.9
2729 Female, age 91, right hemisphere 27.4
2042 Male, age 76, both hemispheres 21.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.8
Samples: 197

Max nTPM: 81.3
Min nTPM: 13.1
Std nTPM: 12.7
Median nTPM: 35.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 81.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 66.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 63.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 62.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 62.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 62.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 57.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 57.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 56.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 56.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 56.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.6
FF:10169-103B7 60 years, female 33.2
FF:10153-102I9 76 years, female 22.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.3
Pig sample Sample description nTPM
Subiculum
nTPM: 22.2
Samples: 4

Max nTPM: 27.3
Min nTPM: 20.1
Sample A Female 27.3
Sample B Female 21.0
Sample C Male 20.5
Sample D Male 20.1
Dorsal hippocampus
nTPM: 25.0
Samples: 4

Max nTPM: 27.8
Min nTPM: 20.5
Sample A Female 27.4
Sample B Female 27.8
Sample C Male 20.5
Sample D Male 24.3
Entorhinal cortex
nTPM: 25.3
Samples: 4

Max nTPM: 30.8
Min nTPM: 21.9
Sample A Female 26.4
Sample B Female 30.8
Sample C Male 22.2
Sample D Male 21.9
Ventral hippocampus
nTPM: 23.4
Samples: 4

Max nTPM: 25.0
Min nTPM: 22.6
Sample A Female 25.0
Sample B Female 22.6
Sample C Male 23.1
Sample D Male 23.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 491.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 491.9
Samples: 4

Max nTPM: 538.5
Min nTPM: 446.0
Sample A Male 446.0
Sample B Male 494.3
Sample C Female 488.6
Sample D Female 538.5
Hippocampal formation
nTPM: 462.3
Samples: 4

Max nTPM: 520.1
Min nTPM: 434.1
Sample A Male 520.1
Sample B Male 434.1
Sample C Female 435.2
Sample D Female 459.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 18.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.7
76098395 Antisense, RP_060626_01_G08, Mouse strain C57BL/6J (56 days, male) 24.2
3 Antisense, RP_040324_01_E07, Mouse strain C57BL/6J (56 days, male) 13.1

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