MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:263.6 nTPM
HPA Brain:110.4 nTPM
GTEx:263.6 nTPM
FANTOM5:209.8 Scaled Tags Per Million
Pig:134.2 nTPM
Mouse:141.5 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.0
2586 Male, age 75, left hemisphere 124.6
2828 Female, age 72, unknown 94.6
2411 Female, age 72, unknown 90.1
1870 Female, age 42, unknown 89.1
2019 Male, age 18, unknown 87.7
1827 Male, age 72, unknown 80.7
2666 Male, age 74, left hemisphere 79.8
1830 Male, age 51, unknown 78.7
1833 Male, age 53, unknown 76.9
2219 Male, age 76, both hemispheres 67.8
Dorsal raphe nucleus
nTPM: 92.7
2298 Female, age 72, unknown 96.8
2750 Male, age 76, both hemispheres 95.3
2047 Male, age 72, unknown 94.8
1828 Male, age 53, unknown 94.5
2016 Female, age 72, unknown 82.0
Inferior colliculus
nTPM: 80.9
2097 Female, age 72, unknown 88.7
1848 Female, age 42, unknown 83.5
1890 Male, age 53, unknown 79.0
2849 Male, age 72, unknown 72.3
Median raphe nucleus
nTPM: 85.7
2220 Male, age 76, midline 85.7
Periaquaductal grey, anterior
nTPM: 110.4
2502 Female, age 75, unknown 122.7
1795 Male, age 51, unknown 112.2
1947 Male, age 18, unknown 96.1
Periaquaductal grey, dorsal
nTPM: 72.1
1840 Male, age 53, unknown 81.3
2464 Female, age 72, unknown 74.8
1831 Male, age 72, unknown 73.3
2850 Male, age 76, both hemispheres 58.8
Periaquaductal grey, lateral
nTPM: 68.7
2053 Male, age 18, unknown 71.6
2272 Male, age 74, both hemispheres 70.6
2140 Male, age 76, both hemispheres 64.0
Pretectal area
nTPM: 85.0
2007 Male, age 72, unknown 106.2
1817 Female, age 42, unknown 97.0
1816 Male, age 51, unknown 95.5
1944 Female, age 72, unknown 94.2
2667 Female, age 75, unknown 83.5
1815 Male, age 53, unknown 82.8
2825 Male, age 18, unknown 78.3
2224 Female, age 72, unknown 77.1
2316 Male, age 76, right hemisphere 75.9
2407 Male, age 75, both hemispheres 72.8
2273 Male, age 74, both hemispheres 71.9
Red nucleus
nTPM: 92.9
2769 Male, age 72, unknown 109.5
2503 Female, age 72, unknown 108.4
2227 Male, age 72, unknown 105.5
2785 Male, age 18, unknown 101.3
1821 Female, age 72, unknown 100.6
2725 Female, age 75, unknown 96.9
2588 Male, age 74, left hemisphere 89.2
1904 Male, age 53, unknown 88.3
2584 Male, age 75, left hemisphere 88.3
1865 Male, age 51, unknown 78.1
1954 Female, age 42, unknown 77.3
2823 Male, age 76, right hemisphere 71.1
Substantia nigra
nTPM: 97.7
1851 Male, age 51, unknown 115.3
1916 Female, age 42, unknown 113.9
2665 Male, age 74, both hemispheres 108.1
2409 Female, age 72, unknown 102.2
1889 Female, age 72, unknown 101.3
2583 Male, age 75, right hemisphere 100.9
1941 Male, age 53, unknown 96.2
2699 Male, age 18, unknown 93.6
2590 Female, age 75, unknown 76.9
2241 Male, age 72, unknown 68.9
Superior colliculus
nTPM: 87.1
1796 Male, age 53, unknown 105.4
2261 Male, age 18, unknown 93.8
2668 Female, age 75, unknown 93.3
2664 Male, age 75, both hemispheres 93.0
2087 Female, age 72, unknown 87.9
1913 Female, age 42, unknown 86.2
2587 Male, age 74, left hemisphere 84.9
1839 Male, age 51, unknown 80.1
1995 Male, age 72, unknown 79.9
1895 Male, age 76, right hemisphere 66.2
Ventral tegmental area
nTPM: 101.8
1915 Female, age 42, unknown 117.1
2223 Female, age 72, unknown 114.8
1942 Male, age 51, unknown 101.7
2410 Female, age 72, unknown 98.0
2218 Male, age 76, both hemispheres 92.1
2021 Male, age 53, unknown 87.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 263.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 263.6
Samples: 139

Max nTPM: 785.8
Min nTPM: 78.2
Std nTPM: 101.9
Median nTPM: 238.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 785.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 662.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 592.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 524.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 496.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 454.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 433.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 417.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 416.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 414.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 403.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 209.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 209.8
FF:10158-103A5 76 years, female 209.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 134.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.6
Samples: 4

Max nTPM: 115.0
Min nTPM: 71.4
Sample A Female 115.0
Sample B Female 71.4
Sample C Male 111.8
Sample D Male 84.3
Midbrain
nTPM: 109.2
Samples: 4

Max nTPM: 129.8
Min nTPM: 91.2
Sample A Female 106.5
Sample B Female 91.2
Sample C Male 129.8
Sample D Male 109.1
Periaqueductal gray
nTPM: 77.8
Samples: 3

Max nTPM: 91.3
Min nTPM: 70.5
Sample B Female 71.6
Sample C Male 91.3
Sample D Male 70.5
Superior colliculi
nTPM: 134.3
Samples: 4

Max nTPM: 147.7
Min nTPM: 118.9
Sample A Female 147.7
Sample B Female 118.9
Sample C Male 147.0
Sample D Male 123.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 141.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.6
Samples: 4

Max nTPM: 155.9
Min nTPM: 126.7
Sample A Male 155.9
Sample B Male 136.4
Sample C Female 126.7
Sample D Female 147.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
68443298 Antisense, RP_050111_01_G03, Mouse strain C57BL/6J (56 days, male) 7.6
2280 Antisense, RP_Baylor_102835, Mouse strain C57BL/6J (56 days, male) 5.3
2279 Antisense, RP_Baylor_102835, Mouse strain C57BL/6J (56 days, male) 1.2

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