MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:150.6 nTPM
HPA Brain:200.5 nTPM
GTEx:150.6 nTPM
FANTOM5:172.2 Scaled Tags Per Million
Pig:170.5 nTPM
Mouse:30.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 200.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 183.7
2586 Male, age 75, left hemisphere 276.0
2019 Male, age 18, unknown 225.6
2828 Female, age 72, unknown 203.4
2411 Female, age 72, unknown 173.7
2666 Male, age 74, left hemisphere 171.6
1827 Male, age 72, unknown 168.8
1833 Male, age 53, unknown 166.1
1870 Female, age 42, unknown 154.6
1830 Male, age 51, unknown 153.6
2219 Male, age 76, both hemispheres 143.3
Dorsal raphe nucleus
nTPM: 200.5
2298 Female, age 72, unknown 218.1
1828 Male, age 53, unknown 197.8
2750 Male, age 76, both hemispheres 196.3
2047 Male, age 72, unknown 195.5
2016 Female, age 72, unknown 194.9
Inferior colliculus
nTPM: 170.2
1890 Male, age 53, unknown 197.9
2097 Female, age 72, unknown 170.6
1848 Female, age 42, unknown 157.5
2849 Male, age 72, unknown 154.9
Median raphe nucleus
nTPM: 146.6
2220 Male, age 76, midline 146.6
Periaquaductal grey, anterior
nTPM: 179.1
1795 Male, age 51, unknown 200.1
2502 Female, age 75, unknown 169.0
1947 Male, age 18, unknown 168.2
Periaquaductal grey, dorsal
nTPM: 179.5
2850 Male, age 76, both hemispheres 208.1
2464 Female, age 72, unknown 171.2
1840 Male, age 53, unknown 170.3
1831 Male, age 72, unknown 168.4
Periaquaductal grey, lateral
nTPM: 172.5
2140 Male, age 76, both hemispheres 181.4
2272 Male, age 74, both hemispheres 175.1
2053 Male, age 18, unknown 161.0
Pretectal area
nTPM: 199.4
1817 Female, age 42, unknown 253.9
1944 Female, age 72, unknown 238.0
2667 Female, age 75, unknown 235.1
1816 Male, age 51, unknown 233.7
2007 Male, age 72, unknown 221.1
1815 Male, age 53, unknown 208.6
2273 Male, age 74, both hemispheres 195.4
2224 Female, age 72, unknown 167.7
2407 Male, age 75, both hemispheres 150.7
2825 Male, age 18, unknown 145.7
2316 Male, age 76, right hemisphere 143.0
Red nucleus
nTPM: 188.8
2785 Male, age 18, unknown 223.0
2823 Male, age 76, right hemisphere 203.2
1821 Female, age 72, unknown 197.6
2503 Female, age 72, unknown 197.6
1904 Male, age 53, unknown 195.6
2725 Female, age 75, unknown 190.7
2769 Male, age 72, unknown 189.9
2227 Male, age 72, unknown 186.3
1954 Female, age 42, unknown 182.0
1865 Male, age 51, unknown 179.2
2588 Male, age 74, left hemisphere 166.3
2584 Male, age 75, left hemisphere 154.8
Substantia nigra
nTPM: 191.7
1851 Male, age 51, unknown 219.1
1889 Female, age 72, unknown 214.1
1916 Female, age 42, unknown 203.4
2409 Female, age 72, unknown 199.6
2665 Male, age 74, both hemispheres 196.2
2699 Male, age 18, unknown 186.6
2583 Male, age 75, right hemisphere 184.4
1941 Male, age 53, unknown 184.0
2241 Male, age 72, unknown 167.7
2590 Female, age 75, unknown 162.0
Superior colliculus
nTPM: 186.9
1995 Male, age 72, unknown 236.4
2087 Female, age 72, unknown 202.1
1913 Female, age 42, unknown 199.8
2664 Male, age 75, both hemispheres 198.7
2261 Male, age 18, unknown 194.2
2668 Female, age 75, unknown 188.8
1796 Male, age 53, unknown 188.0
1895 Male, age 76, right hemisphere 157.7
2587 Male, age 74, left hemisphere 154.1
1839 Male, age 51, unknown 149.1
Ventral tegmental area
nTPM: 164.3
2410 Female, age 72, unknown 192.5
1915 Female, age 42, unknown 171.1
2218 Male, age 76, both hemispheres 162.8
1942 Male, age 51, unknown 162.6
2021 Male, age 53, unknown 148.8
2223 Female, age 72, unknown 148.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 150.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 150.6
Samples: 139

Max nTPM: 753.5
Min nTPM: 41.1
Std nTPM: 98.3
Median nTPM: 125.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 753.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 575.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 474.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 473.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 368.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 346.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 344.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 334.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 327.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 298.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 282.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.2
FF:10158-103A5 76 years, female 172.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 170.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.7
Samples: 4

Max nTPM: 98.1
Min nTPM: 47.5
Sample A Female 53.6
Sample B Female 98.1
Sample C Male 47.5
Sample D Male 83.7
Midbrain
nTPM: 73.5
Samples: 4

Max nTPM: 115.3
Min nTPM: 29.8
Sample A Female 115.3
Sample B Female 95.3
Sample C Male 53.6
Sample D Male 29.8
Periaqueductal gray
nTPM: 170.4
Samples: 3

Max nTPM: 180.0
Min nTPM: 165.3
Sample B Female 165.3
Sample C Male 180.0
Sample D Male 166.0
Superior colliculi
nTPM: 104.2
Samples: 4

Max nTPM: 261.0
Min nTPM: 46.6
Sample A Female 48.2
Sample B Female 261.0
Sample C Male 46.6
Sample D Male 60.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.2
Samples: 4

Max nTPM: 33.4
Min nTPM: 26.5
Sample A Male 33.4
Sample B Male 26.5
Sample C Female 31.4
Sample D Female 29.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68498247 Antisense, RP_050113_01_E12, Mouse strain C57BL/6J (56 days, male) 0.7

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