MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:90.7 nTPM
GTEx:20.2 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:52.7 nTPM
Mouse:31.0 nTPM
Allen mouse:14.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 90.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.4
2019 Male, age 18, unknown 100.0
2828 Female, age 72, unknown 88.8
2219 Male, age 76, both hemispheres 84.8
2586 Male, age 75, left hemisphere 82.6
1827 Male, age 72, unknown 77.0
2666 Male, age 74, left hemisphere 73.1
1833 Male, age 53, unknown 72.6
2411 Female, age 72, unknown 70.5
1830 Male, age 51, unknown 62.6
1870 Female, age 42, unknown 61.4
Dorsal raphe nucleus
nTPM: 73.0
1828 Male, age 53, unknown 82.5
2047 Male, age 72, unknown 77.2
2750 Male, age 76, both hemispheres 73.3
2298 Female, age 72, unknown 68.9
2016 Female, age 72, unknown 62.9
Inferior colliculus
nTPM: 76.1
1848 Female, age 42, unknown 81.2
1890 Male, age 53, unknown 74.9
2097 Female, age 72, unknown 74.3
2849 Male, age 72, unknown 73.9
Median raphe nucleus
nTPM: 86.1
2220 Male, age 76, midline 86.1
Periaquaductal grey, anterior
nTPM: 73.6
2502 Female, age 75, unknown 83.4
1795 Male, age 51, unknown 78.9
1947 Male, age 18, unknown 58.4
Periaquaductal grey, dorsal
nTPM: 71.2
1831 Male, age 72, unknown 88.8
1840 Male, age 53, unknown 70.2
2464 Female, age 72, unknown 68.7
2850 Male, age 76, both hemispheres 56.9
Periaquaductal grey, lateral
nTPM: 65.5
2053 Male, age 18, unknown 70.3
2140 Male, age 76, both hemispheres 63.2
2272 Male, age 74, both hemispheres 63.0
Pretectal area
nTPM: 90.7
1816 Male, age 51, unknown 128.2
1944 Female, age 72, unknown 117.8
2007 Male, age 72, unknown 106.4
1817 Female, age 42, unknown 103.7
2667 Female, age 75, unknown 100.2
1815 Male, age 53, unknown 98.3
2316 Male, age 76, right hemisphere 73.5
2407 Male, age 75, both hemispheres 72.4
2825 Male, age 18, unknown 69.4
2224 Female, age 72, unknown 65.1
2273 Male, age 74, both hemispheres 62.9
Red nucleus
nTPM: 85.3
2588 Male, age 74, left hemisphere 105.2
2785 Male, age 18, unknown 93.8
2823 Male, age 76, right hemisphere 92.8
2584 Male, age 75, left hemisphere 91.0
1904 Male, age 53, unknown 85.1
2769 Male, age 72, unknown 84.4
2227 Male, age 72, unknown 83.3
2503 Female, age 72, unknown 81.9
1954 Female, age 42, unknown 78.8
1821 Female, age 72, unknown 77.2
2725 Female, age 75, unknown 76.8
1865 Male, age 51, unknown 73.2
Substantia nigra
nTPM: 77.9
2665 Male, age 74, both hemispheres 101.0
1889 Female, age 72, unknown 91.8
1916 Female, age 42, unknown 86.0
2583 Male, age 75, right hemisphere 82.8
1851 Male, age 51, unknown 77.1
2699 Male, age 18, unknown 73.6
1941 Male, age 53, unknown 73.1
2409 Female, age 72, unknown 68.3
2590 Female, age 75, unknown 65.1
2241 Male, age 72, unknown 60.1
Superior colliculus
nTPM: 82.6
2087 Female, age 72, unknown 106.4
2664 Male, age 75, both hemispheres 97.7
2261 Male, age 18, unknown 87.1
1796 Male, age 53, unknown 82.4
2668 Female, age 75, unknown 82.0
2587 Male, age 74, left hemisphere 80.3
1839 Male, age 51, unknown 78.2
1895 Male, age 76, right hemisphere 77.1
1995 Male, age 72, unknown 67.7
1913 Female, age 42, unknown 67.1
Ventral tegmental area
nTPM: 76.8
2218 Male, age 76, both hemispheres 88.1
2223 Female, age 72, unknown 86.0
2410 Female, age 72, unknown 78.5
1942 Male, age 51, unknown 71.7
1915 Female, age 42, unknown 69.3
2021 Male, age 53, unknown 67.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.2
Samples: 139

Max nTPM: 35.8
Min nTPM: 7.6
Std nTPM: 5.8
Median nTPM: 20.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 35.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 35.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 34.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 31.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 30.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 30.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 30.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 29.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 29.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 28.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.6
FF:10158-103A5 76 years, female 41.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.9
Samples: 4

Max nTPM: 64.2
Min nTPM: 42.0
Sample A Female 42.0
Sample B Female 42.0
Sample C Male 55.3
Sample D Male 64.2
Midbrain
nTPM: 52.7
Samples: 4

Max nTPM: 81.5
Min nTPM: 21.6
Sample A Female 81.5
Sample B Female 21.6
Sample C Male 61.6
Sample D Male 46.0
Periaqueductal gray
nTPM: 28.6
Samples: 3

Max nTPM: 32.0
Min nTPM: 23.8
Sample B Female 23.8
Sample C Male 32.0
Sample D Male 30.1
Superior colliculi
nTPM: 46.2
Samples: 4

Max nTPM: 59.0
Min nTPM: 31.6
Sample A Female 37.9
Sample B Female 31.6
Sample C Male 59.0
Sample D Male 56.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 33.2
Min nTPM: 29.0
Sample A Male 29.0
Sample B Male 29.5
Sample C Female 32.3
Sample D Female 33.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.5
70546360 Antisense, RP_050623_04_B07, Mouse strain C57BL/6J (56 days, male) 14.5

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