MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.1 nTPM
HPA Brain:43.2 nTPM
GTEx:4.1 nTPM
FANTOM5:1.1 Scaled Tags Per Million
Pig:66.2 nTPM
Mouse:75.9 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.8
2019 Male, age 18, unknown 88.6
2219 Male, age 76, both hemispheres 32.4
2411 Female, age 72, unknown 27.5
1830 Male, age 51, unknown 26.2
1833 Male, age 53, unknown 21.3
1827 Male, age 72, unknown 17.1
1870 Female, age 42, unknown 15.9
2586 Male, age 75, left hemisphere 13.7
2828 Female, age 72, unknown 8.3
2666 Male, age 74, left hemisphere 7.2
Dorsal raphe nucleus
nTPM: 17.0
1828 Male, age 53, unknown 34.8
2047 Male, age 72, unknown 24.5
2750 Male, age 76, both hemispheres 9.8
2016 Female, age 72, unknown 8.4
2298 Female, age 72, unknown 7.4
Inferior colliculus
nTPM: 43.2
1848 Female, age 42, unknown 58.1
2097 Female, age 72, unknown 49.5
1890 Male, age 53, unknown 32.7
2849 Male, age 72, unknown 32.6
Median raphe nucleus
nTPM: 2.4
2220 Male, age 76, midline 2.4
Periaquaductal grey, anterior
nTPM: 6.0
2502 Female, age 75, unknown 14.3
1795 Male, age 51, unknown 2.1
1947 Male, age 18, unknown 1.6
Periaquaductal grey, dorsal
nTPM: 10.5
2464 Female, age 72, unknown 18.2
1831 Male, age 72, unknown 9.2
1840 Male, age 53, unknown 8.1
2850 Male, age 76, both hemispheres 6.4
Periaquaductal grey, lateral
nTPM: 9.2
2272 Male, age 74, both hemispheres 12.6
2140 Male, age 76, both hemispheres 8.8
2053 Male, age 18, unknown 6.2
Pretectal area
nTPM: 18.2
2007 Male, age 72, unknown 40.6
1816 Male, age 51, unknown 28.9
1817 Female, age 42, unknown 28.4
2316 Male, age 76, right hemisphere 23.4
1944 Female, age 72, unknown 22.4
2407 Male, age 75, both hemispheres 16.3
2273 Male, age 74, both hemispheres 13.8
2667 Female, age 75, unknown 9.1
1815 Male, age 53, unknown 7.1
2825 Male, age 18, unknown 5.1
2224 Female, age 72, unknown 4.6
Red nucleus
nTPM: 28.2
2785 Male, age 18, unknown 62.2
1821 Female, age 72, unknown 38.5
2823 Male, age 76, right hemisphere 38.5
1954 Female, age 42, unknown 34.0
2227 Male, age 72, unknown 32.1
2769 Male, age 72, unknown 32.0
1865 Male, age 51, unknown 27.5
2588 Male, age 74, left hemisphere 18.3
2503 Female, age 72, unknown 17.6
2584 Male, age 75, left hemisphere 15.3
1904 Male, age 53, unknown 14.0
2725 Female, age 75, unknown 8.0
Substantia nigra
nTPM: 16.2
1941 Male, age 53, unknown 53.9
1889 Female, age 72, unknown 26.5
1916 Female, age 42, unknown 19.0
2590 Female, age 75, unknown 10.7
2409 Female, age 72, unknown 10.1
1851 Male, age 51, unknown 9.6
2583 Male, age 75, right hemisphere 9.2
2241 Male, age 72, unknown 7.8
2699 Male, age 18, unknown 7.7
2665 Male, age 74, both hemispheres 6.9
Superior colliculus
nTPM: 21.4
1895 Male, age 76, right hemisphere 68.3
2668 Female, age 75, unknown 29.7
1839 Male, age 51, unknown 28.3
2087 Female, age 72, unknown 21.5
2261 Male, age 18, unknown 17.0
2664 Male, age 75, both hemispheres 14.9
2587 Male, age 74, left hemisphere 13.2
1796 Male, age 53, unknown 9.6
1913 Female, age 42, unknown 7.0
1995 Male, age 72, unknown 4.8
Ventral tegmental area
nTPM: 9.6
2410 Female, age 72, unknown 16.9
1915 Female, age 42, unknown 14.4
2223 Female, age 72, unknown 10.1
2021 Male, age 53, unknown 7.0
2218 Male, age 76, both hemispheres 6.1
1942 Male, age 51, unknown 3.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.1
Samples: 139

Max nTPM: 132.8
Min nTPM: 0.0
Std nTPM: 13.6
Median nTPM: 0.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 132.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 64.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 45.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 33.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 28.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 16.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 16.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 15.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 14.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 13.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 11.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.1
FF:10158-103A5 76 years, female 1.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 41.0
Min nTPM: 8.1
Sample A Female 41.0
Sample B Female 8.1
Sample C Male 10.2
Sample D Male 17.0
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 65.4
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 11.7
Sample C Male 33.7
Sample D Male 65.4
Periaqueductal gray
nTPM: 16.7
Samples: 3

Max nTPM: 19.5
Min nTPM: 14.9
Sample B Female 15.7
Sample C Male 19.5
Sample D Male 14.9
Superior colliculi
nTPM: 66.2
Samples: 4

Max nTPM: 101.8
Min nTPM: 11.3
Sample A Female 101.8
Sample B Female 11.3
Sample C Male 94.7
Sample D Male 56.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.9
Samples: 4

Max nTPM: 90.0
Min nTPM: 55.7
Sample A Male 55.7
Sample B Male 81.9
Sample C Female 90.0
Sample D Female 75.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
1023 Antisense, RP_040526_02_F08, Mouse strain C57BL/6J (56 days, male) 14.8
77454656 Antisense, RP_070129_01_B12, Mouse strain C57BL/6J (56 days, male) 12.2
71152527 Antisense, RP_050719_04_B09, Mouse strain C57BL/6J (56 days, male) 9.4
1025 Sense, RPS_Baylor_37050, Mouse strain C57BL/6J (56 days, male) 0.0

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