MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:71.3 nTPM
GTEx:22.3 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:112.1 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.0
2586 Male, age 75, left hemisphere 121.0
2828 Female, age 72, unknown 80.1
2666 Male, age 74, left hemisphere 66.2
1827 Male, age 72, unknown 65.2
2219 Male, age 76, both hemispheres 60.5
1833 Male, age 53, unknown 57.7
2411 Female, age 72, unknown 50.9
1870 Female, age 42, unknown 49.8
1830 Male, age 51, unknown 49.3
2019 Male, age 18, unknown 48.9
Dorsal raphe nucleus
nTPM: 61.5
1828 Male, age 53, unknown 76.8
2047 Male, age 72, unknown 69.8
2016 Female, age 72, unknown 62.8
2298 Female, age 72, unknown 52.7
2750 Male, age 76, both hemispheres 45.1
Inferior colliculus
nTPM: 71.3
1848 Female, age 42, unknown 78.7
1890 Male, age 53, unknown 73.9
2849 Male, age 72, unknown 70.5
2097 Female, age 72, unknown 62.3
Median raphe nucleus
nTPM: 44.4
2220 Male, age 76, midline 44.4
Periaquaductal grey, anterior
nTPM: 69.7
1947 Male, age 18, unknown 72.0
2502 Female, age 75, unknown 69.2
1795 Male, age 51, unknown 68.0
Periaquaductal grey, dorsal
nTPM: 62.1
1840 Male, age 53, unknown 70.9
2464 Female, age 72, unknown 63.6
2850 Male, age 76, both hemispheres 58.5
1831 Male, age 72, unknown 55.4
Periaquaductal grey, lateral
nTPM: 55.0
2053 Male, age 18, unknown 64.6
2140 Male, age 76, both hemispheres 60.0
2272 Male, age 74, both hemispheres 40.6
Pretectal area
nTPM: 64.4
1816 Male, age 51, unknown 84.6
1817 Female, age 42, unknown 79.7
1944 Female, age 72, unknown 73.7
2825 Male, age 18, unknown 65.3
2407 Male, age 75, both hemispheres 64.5
2007 Male, age 72, unknown 62.2
1815 Male, age 53, unknown 61.3
2316 Male, age 76, right hemisphere 60.8
2667 Female, age 75, unknown 60.0
2224 Female, age 72, unknown 50.0
2273 Male, age 74, both hemispheres 45.9
Red nucleus
nTPM: 65.9
1954 Female, age 42, unknown 82.9
2588 Male, age 74, left hemisphere 80.4
2227 Male, age 72, unknown 70.5
1821 Female, age 72, unknown 67.9
2503 Female, age 72, unknown 66.6
1904 Male, age 53, unknown 65.3
1865 Male, age 51, unknown 64.4
2769 Male, age 72, unknown 62.4
2725 Female, age 75, unknown 61.7
2584 Male, age 75, left hemisphere 61.3
2823 Male, age 76, right hemisphere 58.9
2785 Male, age 18, unknown 48.4
Substantia nigra
nTPM: 68.9
2699 Male, age 18, unknown 84.2
1916 Female, age 42, unknown 82.4
2665 Male, age 74, both hemispheres 76.3
2583 Male, age 75, right hemisphere 73.3
2241 Male, age 72, unknown 72.3
1889 Female, age 72, unknown 66.8
1851 Male, age 51, unknown 65.5
2590 Female, age 75, unknown 60.8
1941 Male, age 53, unknown 58.4
2409 Female, age 72, unknown 48.9
Superior colliculus
nTPM: 69.1
2664 Male, age 75, both hemispheres 102.9
2668 Female, age 75, unknown 85.2
2087 Female, age 72, unknown 78.9
2261 Male, age 18, unknown 73.8
1839 Male, age 51, unknown 67.3
1796 Male, age 53, unknown 62.0
1995 Male, age 72, unknown 58.7
1895 Male, age 76, right hemisphere 55.9
1913 Female, age 42, unknown 54.5
2587 Male, age 74, left hemisphere 51.6
Ventral tegmental area
nTPM: 57.0
1915 Female, age 42, unknown 67.2
2410 Female, age 72, unknown 65.0
1942 Male, age 51, unknown 58.2
2218 Male, age 76, both hemispheres 53.5
2021 Male, age 53, unknown 52.9
2223 Female, age 72, unknown 45.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.3
Samples: 139

Max nTPM: 73.0
Min nTPM: 4.0
Std nTPM: 12.9
Median nTPM: 18.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 73.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 58.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 54.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 51.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 50.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 48.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 48.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 47.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 47.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 44.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 43.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.2
FF:10158-103A5 76 years, female 64.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.4
Samples: 4

Max nTPM: 56.8
Min nTPM: 31.5
Sample A Female 56.8
Sample B Female 31.5
Sample C Male 45.7
Sample D Male 31.7
Midbrain
nTPM: 47.2
Samples: 4

Max nTPM: 64.0
Min nTPM: 33.9
Sample A Female 42.4
Sample B Female 48.6
Sample C Male 64.0
Sample D Male 33.9
Periaqueductal gray
nTPM: 43.4
Samples: 3

Max nTPM: 51.9
Min nTPM: 36.8
Sample B Female 51.9
Sample C Male 41.5
Sample D Male 36.8
Superior colliculi
nTPM: 48.9
Samples: 4

Max nTPM: 57.5
Min nTPM: 29.1
Sample A Female 54.8
Sample B Female 29.1
Sample C Male 57.5
Sample D Male 54.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.1
Samples: 4

Max nTPM: 121.7
Min nTPM: 103.7
Sample A Male 121.7
Sample B Male 108.9
Sample C Female 103.7
Sample D Female 114.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
70302051 Antisense, RP_050607_03_D12, Mouse strain C57BL/6J (56 days, male) 2.0

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