HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.5 nTPM
HPA Brain:37.0 nTPM
GTEx:48.5 nTPM
FANTOM5:16.9 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:12.0 nTPM
Allen mouse:17.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Hippocampus
nTPM: 37.0
1898 Male, age 80, left hemisphere 43.1
2148 Female, age 91, left hemisphere 43.1
2529 Female, age 94, left hemisphere 42.6
1911 Female, age 85, right hemisphere 41.9
1855 Male, age 76, left hemisphere 26.3
2621 Female, age 67, right hemisphere 24.9
Dentate gyrus
nTPM: 33.9
2530 Female, age 94, left hemisphere 47.3
2528 Male, age 74, both hemispheres 45.4
2010 Male, age 76, both hemispheres 31.4
1927 Female, age 91, both hemispheres 31.2
2531 Female, age 67, both hemispheres 25.2
2246 Female, age 85, both hemispheres 22.8
Entorhinal gyrus
nTPM: 33.1
2117 Female, age 91, right hemisphere 45.8
1938 Female, age 85, left hemisphere 35.8
2764 Male, age 80, right hemisphere 33.8
1787 Male, age 76, left hemisphere 33.7
2686 Male, age 75, right hemisphere 28.1
2613 Female, age 94, left hemisphere 21.7
Hippocampus, CA1
nTPM: 26.9
1873 Female, age 85, both hemispheres 33.9
2527 Male, age 74, both hemispheres 27.2
2082 Female, age 91, right hemisphere 26.0
2749 Male, age 80, left hemisphere 25.8
2045 Male, age 76, both hemispheres 21.5
Hippocampus, CA2
nTPM: 31.0
1963 Male, age 80, left hemisphere 48.5
2249 Male, age 74, both hemispheres 32.8
1940 Female, age 85, left hemisphere 30.2
2113 Female, age 91, right hemisphere 28.0
2437 Female, age 94, left hemisphere 26.8
1892 Male, age 76, both hemispheres 19.6
Hippocampus, CA3
nTPM: 29.5
2861 Female, age 67, both hemispheres 48.5
2620 Female, age 94, left hemisphere 34.2
1891 Female, age 85, both hemispheres 31.4
1867 Male, age 76, both hemispheres 27.2
2137 Male, age 80, left hemisphere 18.6
2436 Male, age 74, both hemispheres 17.1
Parahippocampal cortex
nTPM: 24.4
1933 Female, age 85, both hemispheres 30.6
1990 Female, age 91, right hemisphere 30.3
2018 Male, age 76, both hemispheres 27.2
2692 Male, age 74, both hemispheres 26.5
2245 Female, age 91, both hemispheres 24.7
2532 Female, age 72, left hemisphere 24.5
2622 Female, age 67, right hemisphere 23.6
1850 Male, age 80, both hemispheres 20.7
2250 Female, age 67, right hemisphere 19.2
2693 Female, age 94, both hemispheres 16.3
Perirhinal gyrus
nTPM: 18.7
1794 Male, age 80, right hemisphere 24.0
1847 Female, age 91, left hemisphere 22.5
2521 Female, age 94, right hemisphere 18.3
2848 Male, age 76, right hemisphere 15.1
1841 Female, age 85, right hemisphere 13.4
Subiculum
nTPM: 28.7
2729 Female, age 91, right hemisphere 35.2
1901 Male, age 80, both hemispheres 32.8
2042 Male, age 76, both hemispheres 31.3
1977 Female, age 85, both hemispheres 30.0
2619 Male, age 74, both hemispheres 28.1
2438 Female, age 94, left hemisphere 15.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 48.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 48.5
Samples: 197

Max nTPM: 133.8
Min nTPM: 12.6
Std nTPM: 19.4
Median nTPM: 44.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 133.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 111.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 109.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 106.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 96.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 94.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 94.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 89.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 88.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 85.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 85.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.9
FF:10153-102I9 76 years, female 23.4
FF:10169-103B7 60 years, female 10.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.2
Pig sample Sample description nTPM
Subiculum
nTPM: 17.2
Samples: 4

Max nTPM: 24.6
Min nTPM: 14.1
Sample A Female 24.6
Sample B Female 15.7
Sample C Male 14.1
Sample D Male 14.3
Dorsal hippocampus
nTPM: 14.8
Samples: 4

Max nTPM: 18.2
Min nTPM: 12.7
Sample A Female 18.2
Sample B Female 14.8
Sample C Male 13.3
Sample D Male 12.7
Entorhinal cortex
nTPM: 13.7
Samples: 4

Max nTPM: 19.0
Min nTPM: 11.6
Sample A Female 11.9
Sample B Female 11.6
Sample C Male 19.0
Sample D Male 12.1
Ventral hippocampus
nTPM: 13.9
Samples: 4

Max nTPM: 16.6
Min nTPM: 10.7
Sample A Female 13.5
Sample B Female 10.7
Sample C Male 16.6
Sample D Male 14.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.0
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.4
Sample A Male 12.3
Sample B Male 9.4
Sample C Female 12.8
Sample D Female 13.5
Hippocampal formation
nTPM: 10.6
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.7
Sample A Male 11.5
Sample B Male 8.7
Sample C Female 11.1
Sample D Female 10.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.4
1505 Antisense, RP_040420_01_E06, Mouse strain C57BL/6J (56 days, male) 17.4
1504 Antisense, RP_040420_01_E06, Mouse strain C57BL/6J (56 days, male) 8.0

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