MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.9 nTPM
HPA Brain:36.7 nTPM
GTEx:32.9 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:10.9 nTPM
Mouse:9.5 nTPM
Allen mouse:15.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.7
2586 Male, age 75, left hemisphere 50.7
2019 Male, age 18, unknown 39.6
2828 Female, age 72, unknown 38.3
1870 Female, age 42, unknown 29.8
2411 Female, age 72, unknown 29.4
1830 Male, age 51, unknown 27.5
1827 Male, age 72, unknown 24.7
1833 Male, age 53, unknown 23.0
2666 Male, age 74, left hemisphere 19.7
2219 Male, age 76, both hemispheres 14.5
Dorsal raphe nucleus
nTPM: 31.9
2016 Female, age 72, unknown 41.2
2298 Female, age 72, unknown 35.2
1828 Male, age 53, unknown 30.8
2750 Male, age 76, both hemispheres 30.2
2047 Male, age 72, unknown 22.3
Inferior colliculus
nTPM: 23.2
1848 Female, age 42, unknown 27.5
1890 Male, age 53, unknown 23.2
2097 Female, age 72, unknown 22.6
2849 Male, age 72, unknown 19.4
Median raphe nucleus
nTPM: 16.1
2220 Male, age 76, midline 16.1
Periaquaductal grey, anterior
nTPM: 36.7
2502 Female, age 75, unknown 50.3
1795 Male, age 51, unknown 36.1
1947 Male, age 18, unknown 23.8
Periaquaductal grey, dorsal
nTPM: 23.9
2464 Female, age 72, unknown 26.1
1831 Male, age 72, unknown 24.5
1840 Male, age 53, unknown 23.8
2850 Male, age 76, both hemispheres 21.1
Periaquaductal grey, lateral
nTPM: 26.3
2140 Male, age 76, both hemispheres 28.4
2053 Male, age 18, unknown 26.8
2272 Male, age 74, both hemispheres 23.8
Pretectal area
nTPM: 29.9
2273 Male, age 74, both hemispheres 39.8
2407 Male, age 75, both hemispheres 36.4
1815 Male, age 53, unknown 34.7
2007 Male, age 72, unknown 33.3
2667 Female, age 75, unknown 33.2
1817 Female, age 42, unknown 29.8
2316 Male, age 76, right hemisphere 29.7
2825 Male, age 18, unknown 26.7
1816 Male, age 51, unknown 23.6
2224 Female, age 72, unknown 22.2
1944 Female, age 72, unknown 19.7
Red nucleus
nTPM: 34.6
2227 Male, age 72, unknown 46.3
2769 Male, age 72, unknown 46.1
2503 Female, age 72, unknown 45.8
2785 Male, age 18, unknown 42.2
1904 Male, age 53, unknown 35.0
1865 Male, age 51, unknown 33.6
1821 Female, age 72, unknown 33.1
1954 Female, age 42, unknown 30.3
2823 Male, age 76, right hemisphere 29.9
2588 Male, age 74, left hemisphere 29.5
2584 Male, age 75, left hemisphere 26.4
2725 Female, age 75, unknown 17.4
Substantia nigra
nTPM: 19.3
1889 Female, age 72, unknown 29.2
2583 Male, age 75, right hemisphere 28.7
1941 Male, age 53, unknown 20.6
2699 Male, age 18, unknown 20.1
1851 Male, age 51, unknown 19.8
1916 Female, age 42, unknown 17.3
2665 Male, age 74, both hemispheres 15.4
2590 Female, age 75, unknown 15.3
2409 Female, age 72, unknown 14.1
2241 Male, age 72, unknown 12.1
Superior colliculus
nTPM: 36.0
2664 Male, age 75, both hemispheres 60.5
2668 Female, age 75, unknown 48.6
1995 Male, age 72, unknown 43.8
1913 Female, age 42, unknown 41.2
1839 Male, age 51, unknown 34.5
1796 Male, age 53, unknown 31.0
2261 Male, age 18, unknown 28.3
1895 Male, age 76, right hemisphere 28.1
2587 Male, age 74, left hemisphere 24.1
2087 Female, age 72, unknown 20.3
Ventral tegmental area
nTPM: 22.8
2223 Female, age 72, unknown 28.6
1942 Male, age 51, unknown 25.7
2021 Male, age 53, unknown 22.3
2410 Female, age 72, unknown 22.2
1915 Female, age 42, unknown 21.4
2218 Male, age 76, both hemispheres 16.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.9
Samples: 139

Max nTPM: 115.1
Min nTPM: 11.5
Std nTPM: 17.2
Median nTPM: 28.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 96.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 87.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 82.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 80.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 77.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 75.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 62.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 61.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 60.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 59.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.3
FF:10158-103A5 76 years, female 19.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.5
Samples: 4

Max nTPM: 12.3
Min nTPM: 3.9
Sample A Female 12.3
Sample B Female 6.4
Sample C Male 11.2
Sample D Male 3.9
Midbrain
nTPM: 10.6
Samples: 4

Max nTPM: 13.1
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 10.1
Sample C Male 13.0
Sample D Male 13.1
Periaqueductal gray
nTPM: 9.3
Samples: 3

Max nTPM: 11.7
Min nTPM: 7.4
Sample B Female 8.8
Sample C Male 11.7
Sample D Male 7.4
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 13.9
Min nTPM: 8.0
Sample A Female 13.9
Sample B Female 8.0
Sample C Male 11.9
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.8
Sample A Male 10.4
Sample B Male 8.8
Sample C Female 8.8
Sample D Female 9.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
1505 Antisense, RP_040420_01_E06, Mouse strain C57BL/6J (56 days, male) 15.7
1504 Antisense, RP_040420_01_E06, Mouse strain C57BL/6J (56 days, male) 6.4

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