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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.1
nTPM
Monaco:
64.3
nTPM
Schmiedel:
44.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
13.1
HPA sample
nTPM
gdT-cell nTPM: 12.3
Samples: 6
Max nTPM: 15.9
Min nTPM: 9.5
P10809_1007
9.5
P10809_1022
15.9
P10809_1041
11.5
P10809_1060
14.8
P10809_1077
10.3
P10809_1098
11.9
MAIT T-cell nTPM: 12.1
Samples: 6
Max nTPM: 14.1
Min nTPM: 8.5
P10809_1006
12.2
P10809_1024
14.1
P10809_1043
10.8
P10809_1062
13.3
P10809_1083
8.5
P10809_1097
13.9
Memory CD4 T-cell nTPM: 9.7
Samples: 6
Max nTPM: 15.6
Min nTPM: 7.3
P10809_1014
9.5
P10809_1026
7.3
P10809_1045
15.6
P10809_1064
7.3
P10809_1086
9.5
P10809_1113
8.7
Memory CD8 T-cell nTPM: 11.4
Samples: 5
Max nTPM: 15.1
Min nTPM: 7.0
P10809_1012
7.0
P10809_1027
13.9
P10809_1046
15.1
P10809_1065
8.9
P10809_1111
12.3
Naive CD4 T-cell nTPM: 13.1
Samples: 6
Max nTPM: 17.9
Min nTPM: 10.4
P10809_1015
10.4
P10809_1030
17.9
P10809_1049
13.4
P10809_1068
13.7
P10809_1085
11.7
P10809_1112
11.6
Naive CD8 T-cell nTPM: 9.4
Samples: 6
Max nTPM: 13.9
Min nTPM: 5.2
P10809_1016
10.9
P10809_1031
5.2
P10809_1050
13.9
P10809_1069
7.6
P10809_1087
9.7
P10809_1110
9.1
T-reg nTPM: 10.5
Samples: 6
Max nTPM: 13.0
Min nTPM: 7.6
P10809_1018
11.5
P10809_1037
11.8
P10809_1056
10.8
P10809_1075
13.0
P10809_1094
7.6
P10809_1106
8.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
64.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 48.2
Samples: 4
Max nTPM: 65.3
Min nTPM: 34.0
RHH5202_R3573
42.3
RHH5230_R3602
65.3
RHH5259_R3631
34.0
RHH5288_R3660
51.0
Effector memory CD8 T-cell nTPM: 52.0
Samples: 4
Max nTPM: 65.7
Min nTPM: 44.6
RHH5203_R3574
47.9
RHH5231_R3603
49.8
RHH5260_R3632
44.6
RHH5289_R3661
65.7
MAIT T-cell nTPM: 50.6
Samples: 4
Max nTPM: 55.3
Min nTPM: 44.4
RHH5233_R3605
44.4
RHH5205_R3576
55.3
RHH5262_R3634
50.5
RHH5297_R3663
52.2
Memory CD4 T-cell TFH nTPM: 46.3
Samples: 4
Max nTPM: 58.6
Min nTPM: 37.0
RHH5300_R3666
37.0
RHH5236_R3608
40.3
RHH5265_R3637
49.4
RHH5208_R3579
58.6
Memory CD4 T-cell Th1 nTPM: 55.6
Samples: 4
Max nTPM: 64.9
Min nTPM: 29.8
RHH5210_R3581
64.8
RHH5302_R3668
64.9
RHH5238_R3610
29.8
RHH5267_R3639
62.7
Memory CD4 T-cell Th1/Th17 nTPM: 64.3
Samples: 4
Max nTPM: 73.6
Min nTPM: 52.8
RHH5303_R3669
73.6
RHH5211_R3582
70.7
RHH5239_R3611
52.8
RHH5268_R3640
60.0
Memory CD4 T-cell Th17 nTPM: 49.1
Samples: 4
Max nTPM: 60.0
Min nTPM: 31.8
RHH5304_R3670
60.0
RHH5212_R3583
45.7
RHH5240_R3612
58.8
RHH5269_R3641
31.8
Memory CD4 T-cell Th2 nTPM: 63.6
Samples: 4
Max nTPM: 74.2
Min nTPM: 52.4
RHH5305_R3671
52.4
RHH5213_R3584
70.5
RHH5241_R3613
74.2
RHH5270_R3642
57.3
Naive CD4 T-cell nTPM: 52.6
Samples: 4
Max nTPM: 58.3
Min nTPM: 47.6
RHH5306_R3672
58.3
RHH5214_R3585
49.2
RHH5242_R3614
47.6
RHH5271_R3643
55.2
Naive CD8 T-cell nTPM: 51.6
Samples: 4
Max nTPM: 56.8
Min nTPM: 40.9
RHH5201_R3572
55.9
RHH5229_R3601
40.9
RHH5258_R3630
52.9
RHH5287_R3659
56.8
Non-Vd2 gdTCR nTPM: 52.9
Samples: 4
Max nTPM: 70.0
Min nTPM: 40.1
RHH5235_R3607
40.1
RHH5264_R3636
55.3
RHH5207_R3578
70.0
RHH5299_R3665
46.2
T-reg nTPM: 59.5
Samples: 4
Max nTPM: 69.9
Min nTPM: 49.1
RHH5301_R3667
49.1
RHH5237_R3609
67.1
RHH5266_R3638
51.8
RHH5209_R3580
69.9
Terminal effector memory CD4 T-cell nTPM: 51.2
Samples: 2
Max nTPM: 54.3
Min nTPM: 48.1
RHH5243_R3615
48.1
RHH5272_R3644
54.3
Terminal effector memory CD8 T-cell nTPM: 53.8
Samples: 4
Max nTPM: 72.6
Min nTPM: 36.0
RHH5232_R3604
56.7
RHH5204_R3575
36.0
RHH5261_R3633
49.7
RHH5296_R3662
72.6
Vd2 gdTCR nTPM: 41.0
Samples: 4
Max nTPM: 56.6
Min nTPM: 26.5
RHH5234_R3606
34.5
RHH5206_R3577
46.3
RHH5263_R3635
56.6
RHH5298_R3664
26.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
