BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.3 nTPM
HPA Brain:2.2 nTPM
GTEx:0.3 nTPM
Pig:0.4 nTPM
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.0
1781 Male, age 74, unknown 1.5
2289 Male, age 61, right hemisphere 1.4
1854 Male, age 80, left hemisphere 1.2
1857 Female, age 85, left hemisphere 1.0
2288 Male, age 75, left hemisphere 1.0
2290 Female, age 72, unknown 1.0
2846 Female, age 79, unknown 0.7
2481 Female, age 94, left hemisphere 0.5
Globus pallidus, externus
nTPM: 0.6
2567 Female, age 72, unknown 0.9
2646 Male, age 61, right hemisphere 0.7
2772 Female, age 79, unknown 0.7
1996 Male, age 80, right hemisphere 0.3
2395 Male, age 75, both hemispheres 0.3
Globus pallidus, internus
nTPM: 0.6
2566 Female, age 72, unknown 1.0
1818 Male, age 74, unknown 0.9
2111 Female, age 85, right hemisphere 0.7
2037 Male, age 80, right hemisphere 0.6
2287 Male, age 75, right hemisphere 0.3
2483 Female, age 94, right hemisphere 0.3
2778 Female, age 91, both hemispheres 0.3
Nucleus accumbens
nTPM: 1.0
1783 Male, age 74, unknown 1.4
1806 Female, age 85, left hemisphere 1.4
2824 Male, age 61, right hemisphere 1.0
1856 Female, age 91, right hemisphere 0.9
2732 Male, age 80, right hemisphere 0.9
2698 Female, age 72, unknown 0.8
2286 Male, age 75, left hemisphere 0.7
2391 Female, age 94, left hemisphere 0.6
Nucleus basalis of Meynert
nTPM: 1.0
2393 Male, age 80, right hemisphere 1.2
2484 Female, age 94, left hemisphere 1.0
2569 Male, age 61, both hemispheres 0.9
2821 Male, age 75, both hemispheres 0.8
Nucleus of the diagonal band
nTPM: 2.0
2029 Male, age 61, right hemisphere 2.9
2195 Female, age 85, both hemispheres 2.3
2775 Male, age 80, right hemisphere 2.1
1812 Female, age 91, both hemispheres 1.4
1979 Male, age 74, unknown 1.2
Putamen
nTPM: 1.0
1838 Male, age 80, right hemisphere 1.4
1937 Female, age 91, right hemisphere 1.1
2466 Female, age 79, unknown 1.1
1829 Male, age 74, unknown 1.0
2489 Female, age 72, unknown 1.0
2647 Male, age 75, left hemisphere 1.0
2482 Female, age 94, left hemisphere 0.6
Septal nuclei
nTPM: 1.8
2009 Female, age 91, both hemispheres 2.3
1960 Male, age 74, unknown 2.2
2059 Female, age 85, both hemispheres 2.2
2031 Female, age 72, unknown 1.9
2629 Female, age 94, right hemisphere 1.8
2394 Male, age 61, left hemisphere 1.2
2199 Male, age 80, right hemisphere 1.0
Stria terminalis, bed nucleus
nTPM: 2.2
2486 Female, age 94, both hemispheres 2.8
1974 Female, age 91, both hemispheres 2.1
2201 Male, age 74, unknown 1.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.3
GTEx sample id Sample description nTPM
0.10.20.30.00.60.00.10.20.30.40.50.60.70.80.91.01.1
Brain - Caudate (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 1.1
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 0.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 0.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 0.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 0.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 0.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 0.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 0.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 0.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 0.6
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0.20.30.40.00.70.00.10.20.30.40.50.60.70.80.9
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.3
Samples: 246

Max nTPM: 0.9
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.3
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 0.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 0.9
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 0.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 0.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 0.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 0.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 0.7
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 0.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 0.7
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 0.7
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 0.6
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0.10.20.30.00.60.00.10.20.30.40.50.60.70.80.91.01.11.2
Brain - Putamen (basal ganglia)
Average nTPM: 0.2
Samples: 205

Max nTPM: 1.2
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 1.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 0.8
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 0.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 0.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 0.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 0.6
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 0.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 0.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 0.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 0.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 0.5
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BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.4
Pig sample Sample description nTPM
0.20.30.30.20.40.000.050.100.150.200.250.300.350.40
 		Caudate
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.4
Sample C Male 0.2
Sample D Male 0.3
0.30.30.30.20.30.000.050.100.150.200.250.300.350.400.450.50
 		Putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.5
Sample C Male 0.3
Sample D Male 0.2
0.30.30.30.30.30.000.050.100.150.200.250.300.350.400.450.50
 		Septum
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.5
Sample C Male 0.3
Sample D Male 0.3
0.20.30.30.20.40.000.050.100.150.200.250.300.350.40
 		Ventral pallidum
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.2
Sample D Male 0.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
0.00.00.00.00.00.000.010.020.030.040.050.060.070.080.090.10
 		Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71832787 Antisense, RP_051005_03_F08, Mouse strain C57BL/6J (56 days, male) 0.0
77924418 Antisense, RP_070219_01_H03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71832787 Antisense, RP_051005_03_F08, Mouse strain C57BL/6J (56 days, male) 0.0
77924418 Antisense, RP_070219_01_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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