MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA Brain:116.6 nTPM
GTEx:31.2 nTPM
FANTOM5:49.7 Scaled Tags Per Million
Pig:63.8 nTPM
Mouse:57.1 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 116.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.3
2586 Male, age 75, left hemisphere 148.2
2019 Male, age 18, unknown 122.0
2219 Male, age 76, both hemispheres 109.4
2666 Male, age 74, left hemisphere 106.5
2828 Female, age 72, unknown 102.9
1827 Male, age 72, unknown 98.8
2411 Female, age 72, unknown 97.9
1830 Male, age 51, unknown 92.7
1833 Male, age 53, unknown 92.6
1870 Female, age 42, unknown 91.9
Dorsal raphe nucleus
nTPM: 96.7
2047 Male, age 72, unknown 106.2
1828 Male, age 53, unknown 102.2
2298 Female, age 72, unknown 95.1
2750 Male, age 76, both hemispheres 92.1
2016 Female, age 72, unknown 88.1
Inferior colliculus
nTPM: 108.9
2097 Female, age 72, unknown 118.4
1890 Male, age 53, unknown 111.0
1848 Female, age 42, unknown 107.5
2849 Male, age 72, unknown 98.7
Median raphe nucleus
nTPM: 95.1
2220 Male, age 76, midline 95.1
Periaquaductal grey, anterior
nTPM: 115.0
2502 Female, age 75, unknown 125.2
1947 Male, age 18, unknown 110.5
1795 Male, age 51, unknown 109.3
Periaquaductal grey, dorsal
nTPM: 82.3
2464 Female, age 72, unknown 91.1
1840 Male, age 53, unknown 85.7
1831 Male, age 72, unknown 79.1
2850 Male, age 76, both hemispheres 73.4
Periaquaductal grey, lateral
nTPM: 84.4
2140 Male, age 76, both hemispheres 87.9
2272 Male, age 74, both hemispheres 85.2
2053 Male, age 18, unknown 80.0
Pretectal area
nTPM: 100.9
2007 Male, age 72, unknown 133.0
1816 Male, age 51, unknown 118.0
1944 Female, age 72, unknown 110.8
1817 Female, age 42, unknown 109.8
2667 Female, age 75, unknown 101.1
2316 Male, age 76, right hemisphere 96.2
2825 Male, age 18, unknown 93.8
1815 Male, age 53, unknown 91.2
2407 Male, age 75, both hemispheres 89.5
2224 Female, age 72, unknown 88.4
2273 Male, age 74, both hemispheres 78.0
Red nucleus
nTPM: 116.6
2588 Male, age 74, left hemisphere 129.6
2584 Male, age 75, left hemisphere 126.7
2785 Male, age 18, unknown 126.7
2823 Male, age 76, right hemisphere 124.5
2769 Male, age 72, unknown 123.8
2227 Male, age 72, unknown 123.7
1954 Female, age 42, unknown 113.8
1821 Female, age 72, unknown 110.0
1904 Male, age 53, unknown 108.9
2503 Female, age 72, unknown 107.8
1865 Male, age 51, unknown 106.2
2725 Female, age 75, unknown 98.0
Substantia nigra
nTPM: 106.6
1941 Male, age 53, unknown 143.1
1916 Female, age 42, unknown 122.5
2583 Male, age 75, right hemisphere 108.0
2665 Male, age 74, both hemispheres 107.4
1889 Female, age 72, unknown 107.1
1851 Male, age 51, unknown 103.4
2590 Female, age 75, unknown 98.6
2241 Male, age 72, unknown 97.5
2409 Female, age 72, unknown 90.8
2699 Male, age 18, unknown 87.4
Superior colliculus
nTPM: 97.0
2668 Female, age 75, unknown 110.6
2087 Female, age 72, unknown 109.1
2664 Male, age 75, both hemispheres 107.1
2261 Male, age 18, unknown 107.0
1796 Male, age 53, unknown 101.7
1895 Male, age 76, right hemisphere 99.0
1839 Male, age 51, unknown 97.1
2587 Male, age 74, left hemisphere 85.6
1913 Female, age 42, unknown 77.1
1995 Male, age 72, unknown 76.1
Ventral tegmental area
nTPM: 102.0
1942 Male, age 51, unknown 113.2
2218 Male, age 76, both hemispheres 107.5
2410 Female, age 72, unknown 107.3
1915 Female, age 42, unknown 100.9
2223 Female, age 72, unknown 100.0
2021 Male, age 53, unknown 83.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.2
Samples: 139

Max nTPM: 105.3
Min nTPM: 15.6
Std nTPM: 11.0
Median nTPM: 29.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 105.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 64.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 64.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 59.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 56.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 50.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 50.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 45.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 45.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 44.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.7
FF:10158-103A5 76 years, female 49.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.2
Samples: 4

Max nTPM: 60.9
Min nTPM: 33.0
Sample A Female 58.0
Sample B Female 40.7
Sample C Male 60.9
Sample D Male 33.0
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 94.2
Min nTPM: 41.7
Sample A Female 43.1
Sample B Female 41.7
Sample C Male 94.2
Sample D Male 59.4
Periaqueductal gray
nTPM: 41.3
Samples: 3

Max nTPM: 46.7
Min nTPM: 34.8
Sample B Female 42.4
Sample C Male 46.7
Sample D Male 34.8
Superior colliculi
nTPM: 63.8
Samples: 4

Max nTPM: 87.5
Min nTPM: 46.4
Sample A Female 58.7
Sample B Female 46.4
Sample C Male 87.5
Sample D Male 62.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.2
Samples: 4

Max nTPM: 57.9
Min nTPM: 55.9
Sample A Male 55.9
Sample B Male 57.4
Sample C Female 57.9
Sample D Female 57.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
70946251 Antisense, RP_050426_04_G06, Mouse strain C57BL/6J (56 days, male) 6.7
77332673 Antisense, RP_070116_02_B04, Mouse strain C57BL/6J (56 days, male) 4.1

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