MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.4 nTPM
HPA Brain:28.9 nTPM
GTEx:5.4 nTPM
FANTOM5:37.9 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:17.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.1
2666 Male, age 74, left hemisphere 26.5
2219 Male, age 76, both hemispheres 26.4
2411 Female, age 72, unknown 20.8
1833 Male, age 53, unknown 20.3
1870 Female, age 42, unknown 19.8
2586 Male, age 75, left hemisphere 19.2
2019 Male, age 18, unknown 18.1
2828 Female, age 72, unknown 17.9
1830 Male, age 51, unknown 16.4
1827 Male, age 72, unknown 15.8
Dorsal raphe nucleus
nTPM: 20.9
2298 Female, age 72, unknown 26.5
2016 Female, age 72, unknown 21.5
2047 Male, age 72, unknown 19.9
1828 Male, age 53, unknown 19.2
2750 Male, age 76, both hemispheres 17.5
Inferior colliculus
nTPM: 21.0
1890 Male, age 53, unknown 23.8
2849 Male, age 72, unknown 20.2
1848 Female, age 42, unknown 20.0
2097 Female, age 72, unknown 19.9
Median raphe nucleus
nTPM: 18.9
2220 Male, age 76, midline 18.9
Periaquaductal grey, anterior
nTPM: 28.9
1947 Male, age 18, unknown 31.2
1795 Male, age 51, unknown 30.9
2502 Female, age 75, unknown 24.5
Periaquaductal grey, dorsal
nTPM: 25.4
1840 Male, age 53, unknown 31.0
2850 Male, age 76, both hemispheres 26.5
1831 Male, age 72, unknown 24.3
2464 Female, age 72, unknown 19.8
Periaquaductal grey, lateral
nTPM: 23.5
2053 Male, age 18, unknown 25.1
2140 Male, age 76, both hemispheres 24.4
2272 Male, age 74, both hemispheres 21.0
Pretectal area
nTPM: 21.9
1817 Female, age 42, unknown 26.8
2007 Male, age 72, unknown 25.7
2224 Female, age 72, unknown 25.0
1815 Male, age 53, unknown 23.8
1816 Male, age 51, unknown 22.9
1944 Female, age 72, unknown 22.7
2825 Male, age 18, unknown 21.9
2667 Female, age 75, unknown 20.4
2316 Male, age 76, right hemisphere 19.4
2273 Male, age 74, both hemispheres 18.3
2407 Male, age 75, both hemispheres 13.6
Red nucleus
nTPM: 20.9
2588 Male, age 74, left hemisphere 25.9
2584 Male, age 75, left hemisphere 23.1
1904 Male, age 53, unknown 22.3
2725 Female, age 75, unknown 21.8
1821 Female, age 72, unknown 21.2
1954 Female, age 42, unknown 20.2
2769 Male, age 72, unknown 19.8
2823 Male, age 76, right hemisphere 19.8
2503 Female, age 72, unknown 19.6
2785 Male, age 18, unknown 19.5
1865 Male, age 51, unknown 19.1
2227 Male, age 72, unknown 18.9
Substantia nigra
nTPM: 22.8
2665 Male, age 74, both hemispheres 33.3
2241 Male, age 72, unknown 28.5
1851 Male, age 51, unknown 25.5
1889 Female, age 72, unknown 23.0
1916 Female, age 42, unknown 22.7
2590 Female, age 75, unknown 22.4
2409 Female, age 72, unknown 22.0
2699 Male, age 18, unknown 19.1
2583 Male, age 75, right hemisphere 18.7
1941 Male, age 53, unknown 12.7
Superior colliculus
nTPM: 20.3
2668 Female, age 75, unknown 23.7
2261 Male, age 18, unknown 23.1
2587 Male, age 74, left hemisphere 21.2
1895 Male, age 76, right hemisphere 21.1
1995 Male, age 72, unknown 21.1
2087 Female, age 72, unknown 21.0
1796 Male, age 53, unknown 19.9
1839 Male, age 51, unknown 18.3
1913 Female, age 42, unknown 17.9
2664 Male, age 75, both hemispheres 15.4
Ventral tegmental area
nTPM: 23.3
2021 Male, age 53, unknown 25.9
1942 Male, age 51, unknown 25.6
2223 Female, age 72, unknown 24.6
2218 Male, age 76, both hemispheres 22.3
1915 Female, age 42, unknown 21.2
2410 Female, age 72, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.4
Samples: 139

Max nTPM: 16.7
Min nTPM: 1.7
Std nTPM: 2.1
Median nTPM: 5.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 16.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 14.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 12.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 12.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 10.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 10.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 8.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 8.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 8.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 8.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 7.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.9
FF:10158-103A5 76 years, female 37.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.9
Samples: 4

Max nTPM: 25.2
Min nTPM: 17.5
Sample A Female 20.4
Sample B Female 20.6
Sample C Male 25.2
Sample D Male 17.5
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 23.0
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 18.5
Sample C Male 23.0
Sample D Male 17.3
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 19.9
Min nTPM: 16.9
Sample B Female 17.9
Sample C Male 19.9
Sample D Male 16.9
Superior colliculi
nTPM: 18.2
Samples: 4

Max nTPM: 20.4
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 19.4
Sample C Male 19.2
Sample D Male 20.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 20.9
Min nTPM: 14.7
Sample A Male 16.5
Sample B Male 14.7
Sample C Female 16.5
Sample D Female 20.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74430888 Antisense, RP_060207_01_C01, Mouse strain C57BL/6J (56 days, male) 0.2

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