HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:7.1 nTPM
HPA Brain:41.8 nTPM
GTEx:7.1 nTPM
FANTOM5:171.2 Scaled Tags Per Million
Pig:50.5 nTPM
Mouse:24.1 nTPM
Allen mouse:3.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA064237
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 41.8
Sample id Sample description nTPM
Hippocampus
nTPM: 41.8
1898 Male, age 80, left hemisphere 65.9
1855 Male, age 76, left hemisphere 58.8
2621 Female, age 67, right hemisphere 35.9
2529 Female, age 94, left hemisphere 33.9
2148 Female, age 91, left hemisphere 30.1
1911 Female, age 85, right hemisphere 26.4
Dentate gyrus
nTPM: 36.1
2010 Male, age 76, both hemispheres 48.0
2530 Female, age 94, left hemisphere 46.5
2246 Female, age 85, both hemispheres 34.0
2531 Female, age 67, both hemispheres 33.2
2528 Male, age 74, both hemispheres 30.2
1927 Female, age 91, both hemispheres 24.7
Entorhinal gyrus
nTPM: 28.1
1787 Male, age 76, left hemisphere 33.1
1938 Female, age 85, left hemisphere 30.3
2764 Male, age 80, right hemisphere 30.1
2686 Male, age 75, right hemisphere 28.1
2613 Female, age 94, left hemisphere 24.2
2117 Female, age 91, right hemisphere 22.9
Hippocampus, CA1
nTPM: 34.6
1873 Female, age 85, both hemispheres 42.7
2749 Male, age 80, left hemisphere 42.1
2527 Male, age 74, both hemispheres 35.2
2082 Female, age 91, right hemisphere 27.6
2045 Male, age 76, both hemispheres 25.3
Hippocampus, CA2
nTPM: 32.8
1963 Male, age 80, left hemisphere 48.1
2437 Female, age 94, left hemisphere 34.3
2249 Male, age 74, both hemispheres 31.9
1940 Female, age 85, left hemisphere 29.2
2113 Female, age 91, right hemisphere 28.8
1892 Male, age 76, both hemispheres 24.5
Hippocampus, CA3
nTPM: 32.5
2861 Female, age 67, both hemispheres 51.9
2436 Male, age 74, both hemispheres 40.8
2137 Male, age 80, left hemisphere 31.4
1891 Female, age 85, both hemispheres 24.4
1867 Male, age 76, both hemispheres 23.7
2620 Female, age 94, left hemisphere 22.5
Parahippocampal cortex
nTPM: 30.6
2018 Male, age 76, both hemispheres 36.3
1933 Female, age 85, both hemispheres 35.5
2250 Female, age 67, right hemisphere 34.1
2245 Female, age 91, both hemispheres 32.2
2622 Female, age 67, right hemisphere 32.0
1850 Male, age 80, both hemispheres 30.3
2532 Female, age 72, left hemisphere 30.0
2692 Male, age 74, both hemispheres 25.7
1990 Female, age 91, right hemisphere 25.5
2693 Female, age 94, both hemispheres 24.7
Perirhinal gyrus
nTPM: 32.8
1841 Female, age 85, right hemisphere 34.8
1794 Male, age 80, right hemisphere 33.8
2848 Male, age 76, right hemisphere 32.7
1847 Female, age 91, left hemisphere 32.5
2521 Female, age 94, right hemisphere 30.1
Subiculum
nTPM: 25.8
1977 Female, age 85, both hemispheres 29.1
2438 Female, age 94, left hemisphere 27.0
2729 Female, age 91, right hemisphere 26.9
2619 Male, age 74, both hemispheres 26.8
1901 Male, age 80, both hemispheres 22.5
2042 Male, age 76, both hemispheres 22.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 7.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.1
Samples: 197

Max nTPM: 22.8
Min nTPM: 2.3
Std nTPM: 2.6
Median nTPM: 6.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 22.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 18.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 15.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 14.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 14.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 13.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 12.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 12.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 12.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 12.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 11.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 171.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 171.2
FF:10169-103B7 60 years, female 247.1
FF:10153-102I9 76 years, female 95.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 50.5
Pig sample Sample description nTPM
Subiculum
nTPM: 42.6
Samples: 4

Max nTPM: 48.1
Min nTPM: 36.4
Sample A Female 48.1
Sample B Female 41.3
Sample C Male 44.4
Sample D Male 36.4
Dorsal hippocampus
nTPM: 35.8
Samples: 4

Max nTPM: 43.8
Min nTPM: 29.7
Sample A Female 39.3
Sample B Female 43.8
Sample C Male 29.7
Sample D Male 30.4
Entorhinal cortex
nTPM: 32.7
Samples: 4

Max nTPM: 33.8
Min nTPM: 30.9
Sample A Female 32.8
Sample B Female 30.9
Sample C Male 33.2
Sample D Male 33.8
Ventral hippocampus
nTPM: 50.5
Samples: 4

Max nTPM: 67.0
Min nTPM: 34.9
Sample A Female 67.0
Sample B Female 34.9
Sample C Male 54.0
Sample D Male 46.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.1
Samples: 4

Max nTPM: 32.1
Min nTPM: 18.2
Sample A Male 22.5
Sample B Male 18.2
Sample C Female 23.5
Sample D Female 32.1
Hippocampal formation
nTPM: 24.0
Samples: 4

Max nTPM: 27.7
Min nTPM: 20.1
Sample A Male 22.8
Sample B Male 25.4
Sample C Female 27.7
Sample D Female 20.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.7
74430888 Antisense, RP_060207_01_C01, Mouse strain C57BL/6J (56 days, male) 3.7

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