MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.2 nTPM
HPA Brain:31.3 nTPM
GTEx:4.2 nTPM
FANTOM5:6.0 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:8.4 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.6
1827 Male, age 72, unknown 23.9
2019 Male, age 18, unknown 23.5
2666 Male, age 74, left hemisphere 22.6
2828 Female, age 72, unknown 22.4
2219 Male, age 76, both hemispheres 20.8
2586 Male, age 75, left hemisphere 16.9
1870 Female, age 42, unknown 15.9
1833 Male, age 53, unknown 15.5
1830 Male, age 51, unknown 13.2
2411 Female, age 72, unknown 11.5
Dorsal raphe nucleus
nTPM: 13.5
2298 Female, age 72, unknown 17.1
2016 Female, age 72, unknown 14.6
1828 Male, age 53, unknown 14.2
2047 Male, age 72, unknown 10.8
2750 Male, age 76, both hemispheres 10.7
Inferior colliculus
nTPM: 17.1
1848 Female, age 42, unknown 22.4
2849 Male, age 72, unknown 20.5
2097 Female, age 72, unknown 13.0
1890 Male, age 53, unknown 12.4
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Periaquaductal grey, anterior
nTPM: 25.4
1795 Male, age 51, unknown 29.3
1947 Male, age 18, unknown 25.1
2502 Female, age 75, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 20.9
1840 Male, age 53, unknown 26.1
1831 Male, age 72, unknown 21.9
2850 Male, age 76, both hemispheres 19.0
2464 Female, age 72, unknown 16.5
Periaquaductal grey, lateral
nTPM: 18.5
2272 Male, age 74, both hemispheres 19.6
2053 Male, age 18, unknown 18.2
2140 Male, age 76, both hemispheres 17.8
Pretectal area
nTPM: 31.3
1816 Male, age 51, unknown 53.1
1944 Female, age 72, unknown 43.3
1817 Female, age 42, unknown 42.4
2007 Male, age 72, unknown 38.9
2667 Female, age 75, unknown 37.7
1815 Male, age 53, unknown 37.1
2273 Male, age 74, both hemispheres 20.3
2825 Male, age 18, unknown 20.3
2224 Female, age 72, unknown 19.6
2316 Male, age 76, right hemisphere 17.1
2407 Male, age 75, both hemispheres 14.3
Red nucleus
nTPM: 15.6
2785 Male, age 18, unknown 20.9
2823 Male, age 76, right hemisphere 18.1
2503 Female, age 72, unknown 17.6
2725 Female, age 75, unknown 16.5
1904 Male, age 53, unknown 16.3
2584 Male, age 75, left hemisphere 15.9
1954 Female, age 42, unknown 15.6
1821 Female, age 72, unknown 15.1
2588 Male, age 74, left hemisphere 14.8
1865 Male, age 51, unknown 12.8
2769 Male, age 72, unknown 11.8
2227 Male, age 72, unknown 11.5
Substantia nigra
nTPM: 15.0
1889 Female, age 72, unknown 30.4
2665 Male, age 74, both hemispheres 18.7
1916 Female, age 42, unknown 14.3
1851 Male, age 51, unknown 14.0
2583 Male, age 75, right hemisphere 13.8
2409 Female, age 72, unknown 12.8
2241 Male, age 72, unknown 12.1
2699 Male, age 18, unknown 11.9
2590 Female, age 75, unknown 11.0
1941 Male, age 53, unknown 10.6
Superior colliculus
nTPM: 25.9
2087 Female, age 72, unknown 37.7
2664 Male, age 75, both hemispheres 31.4
1796 Male, age 53, unknown 28.6
2668 Female, age 75, unknown 26.7
1995 Male, age 72, unknown 26.2
2261 Male, age 18, unknown 24.9
1913 Female, age 42, unknown 24.3
1839 Male, age 51, unknown 19.6
1895 Male, age 76, right hemisphere 19.6
2587 Male, age 74, left hemisphere 19.6
Ventral tegmental area
nTPM: 15.0
2218 Male, age 76, both hemispheres 18.6
2410 Female, age 72, unknown 16.0
1942 Male, age 51, unknown 14.7
2021 Male, age 53, unknown 14.3
2223 Female, age 72, unknown 14.0
1915 Female, age 42, unknown 12.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.2
Samples: 139

Max nTPM: 8.5
Min nTPM: 0.2
Std nTPM: 1.4
Median nTPM: 4.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 8.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 8.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 8.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 8.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 7.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 6.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 6.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 6.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 6.3
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 6.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 6.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.0
FF:10158-103A5 76 years, female 6.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.3
Samples: 4

Max nTPM: 9.0
Min nTPM: 5.5
Sample A Female 7.5
Sample B Female 5.5
Sample C Male 9.0
Sample D Male 7.3
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 9.5
Min nTPM: 6.8
Sample A Female 9.5
Sample B Female 6.8
Sample C Male 9.5
Sample D Male 8.5
Periaqueductal gray
nTPM: 10.2
Samples: 3

Max nTPM: 11.3
Min nTPM: 9.5
Sample B Female 9.5
Sample C Male 11.3
Sample D Male 9.7
Superior colliculi
nTPM: 9.3
Samples: 4

Max nTPM: 12.4
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 7.4
Sample C Male 11.0
Sample D Male 12.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 8.8
Min nTPM: 7.9
Sample A Male 8.4
Sample B Male 8.3
Sample C Female 8.8
Sample D Female 7.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
71358589 Antisense, RP_050725_03_E09, Mouse strain C57BL/6J (56 days, male) 5.8
68799035 Antisense, RP_050217_01_H05, Mouse strain C57BL/6J (56 days, male) 2.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org