HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:6.1 nTPM
HPA Brain:45.5 nTPM
GTEx:6.1 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Pig:14.0 nTPM
Mouse:18.2 nTPM
Allen mouse:8.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA063350
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.5
Sample id Sample description nTPM
Hippocampus
nTPM: 27.4
2148 Female, age 91, left hemisphere 36.9
2621 Female, age 67, right hemisphere 29.0
1898 Male, age 80, left hemisphere 25.8
1855 Male, age 76, left hemisphere 25.6
1911 Female, age 85, right hemisphere 24.7
2529 Female, age 94, left hemisphere 22.6
Dentate gyrus
nTPM: 28.3
2531 Female, age 67, both hemispheres 41.9
1927 Female, age 91, both hemispheres 37.0
2246 Female, age 85, both hemispheres 33.6
2528 Male, age 74, both hemispheres 23.0
2010 Male, age 76, both hemispheres 20.2
2530 Female, age 94, left hemisphere 14.0
Entorhinal gyrus
nTPM: 40.8
1938 Female, age 85, left hemisphere 48.0
2613 Female, age 94, left hemisphere 44.9
2764 Male, age 80, right hemisphere 42.6
2686 Male, age 75, right hemisphere 41.9
1787 Male, age 76, left hemisphere 40.5
2117 Female, age 91, right hemisphere 26.8
Hippocampus, CA1
nTPM: 28.5
2045 Male, age 76, both hemispheres 43.5
1873 Female, age 85, both hemispheres 33.6
2527 Male, age 74, both hemispheres 26.5
2082 Female, age 91, right hemisphere 23.7
2749 Male, age 80, left hemisphere 15.3
Hippocampus, CA2
nTPM: 22.2
2437 Female, age 94, left hemisphere 26.1
1892 Male, age 76, both hemispheres 25.9
2113 Female, age 91, right hemisphere 25.7
1940 Female, age 85, left hemisphere 25.0
2249 Male, age 74, both hemispheres 19.4
1963 Male, age 80, left hemisphere 11.3
Hippocampus, CA3
nTPM: 30.3
2861 Female, age 67, both hemispheres 47.0
2620 Female, age 94, left hemisphere 43.0
1891 Female, age 85, both hemispheres 29.5
2436 Male, age 74, both hemispheres 25.2
1867 Male, age 76, both hemispheres 21.4
2137 Male, age 80, left hemisphere 15.4
Parahippocampal cortex
nTPM: 39.6
2693 Female, age 94, both hemispheres 50.8
1850 Male, age 80, both hemispheres 47.0
1933 Female, age 85, both hemispheres 43.3
2622 Female, age 67, right hemisphere 43.0
1990 Female, age 91, right hemisphere 39.5
2532 Female, age 72, left hemisphere 39.0
2692 Male, age 74, both hemispheres 38.2
2245 Female, age 91, both hemispheres 33.7
2250 Female, age 67, right hemisphere 32.9
2018 Male, age 76, both hemispheres 28.9
Perirhinal gyrus
nTPM: 45.5
2848 Male, age 76, right hemisphere 47.5
1847 Female, age 91, left hemisphere 46.4
1841 Female, age 85, right hemisphere 45.2
1794 Male, age 80, right hemisphere 44.4
2521 Female, age 94, right hemisphere 44.0
Subiculum
nTPM: 27.6
1977 Female, age 85, both hemispheres 35.7
2619 Male, age 74, both hemispheres 35.5
2729 Female, age 91, right hemisphere 34.5
2438 Female, age 94, left hemisphere 23.2
1901 Male, age 80, both hemispheres 20.6
2042 Male, age 76, both hemispheres 16.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 6.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.1
Samples: 197

Max nTPM: 15.1
Min nTPM: 1.8
Std nTPM: 2.3
Median nTPM: 5.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 15.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 13.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 12.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 11.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 11.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 11.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 11.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 10.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 10.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 10.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 10.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.6
FF:10153-102I9 76 years, female 35.1
FF:10169-103B7 60 years, female 32.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.0
Pig sample Sample description nTPM
Subiculum
nTPM: 10.9
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.4
Sample A Female 13.0
Sample B Female 10.0
Sample C Male 9.4
Sample D Male 11.1
Dorsal hippocampus
nTPM: 8.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 8.6
Sample C Male 10.5
Sample D Male 9.3
Entorhinal cortex
nTPM: 14.1
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.1
Sample A Female 15.5
Sample B Female 12.1
Sample C Male 13.7
Sample D Male 14.9
Ventral hippocampus
nTPM: 8.3
Samples: 4

Max nTPM: 12.1
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 8.6
Sample C Male 12.1
Sample D Male 6.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.7
Samples: 4

Max nTPM: 12.2
Min nTPM: 11.2
Sample A Male 11.5
Sample B Male 11.2
Sample C Female 12.2
Sample D Female 11.8
Hippocampal formation
nTPM: 18.3
Samples: 4

Max nTPM: 19.9
Min nTPM: 14.7
Sample A Male 14.7
Sample B Male 19.9
Sample C Female 19.7
Sample D Female 18.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.1
71358589 Antisense, RP_050725_03_E09, Mouse strain C57BL/6J (56 days, male) 10.0
68799035 Antisense, RP_050217_01_H05, Mouse strain C57BL/6J (56 days, male) 6.2

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